BtaEX6068148 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000022777 | CDC42BPA
Description
Bos taurus CDC42 binding protein kinase alpha (DMPK-like) (CDC42BPA), mRNA. [Source:RefSeq mRNA;Acc:NM_001192937]
Coordinates
chr16:30711827-30720755:-
Coord C1 exon
chr16:30720632-30720755
Coord A exon
chr16:30719846-30719963
Coord C2 exon
chr16:30711827-30711944
Length
118 bp
Sequences
Splice sites
3' ss Seq
ACAGATGTTTTTTCTTGCAGGGA
3' ss Score
9.25
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
AAGGGGATGAACTGGTAGTTCCTGAAACATCAGATAATAGTCGGAAGCAAATGGTTAGAAATATTAACAATAAGAGGCGTTACTCTTTCAGAGTTCCGGAAGAGGAAAGAATGCAACAGAGGAG
Seq A exon
GGAGATGTTACGAGATCCAGAAATGAGAAATAAGTTAATTTCTAACCCAACTAATTTTAACCACATAGCACATATGGGTCCAGGAGATGGAATACAGATCCTAAAAGACCTGCCCATG
Seq C2 exon
AACCCTCGGCCTCAGGAAAGTCGGACAGCATTCAGTGGCTCCGTCAGTATTCCGTCTATCACCAAATCCCGCCCTGAACCCGGTCGCTCCATGAGCGCCAGCAGTGGCCTATCAGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022777-'47-64,'47-61,49-64=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.829 A=0.965 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGGTAGTTCCTGAAACATCAGA
R:
TTGCTGATAGGCCACTGCTG
Band lengths:
232-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]