RnoEX0018982 @ rn6
Exon Skipping
Gene
ENSRNOG00000002841 | Cdc42bpa
Description
CDC42 binding protein kinase alpha [Source:RGD Symbol;Acc:621406]
Coordinates
chr13:98436229-98444875:+
Coord C1 exon
chr13:98436229-98436352
Coord A exon
chr13:98437251-98437368
Coord C2 exon
chr13:98444758-98444875
Length
118 bp
Sequences
Splice sites
3' ss Seq
ACAGGTATTCTACCTTACAGGGA
3' ss Score
6.2
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
AAGGGGATGAACTTGTAGTTCCTGAAACATCAGATAATAGCCGAAAACAGATGGTTAGAAACATCAACAACAAACGGCGTTACTCCTTCCGGGTCCCAGAAGAAGAGAGGATGCAGCAGAGAAG
Seq A exon
GGAGATGCTACGAGATCCAGAAATGAGAAATAAATTAATTTCTAACCCAACTAATTTTAACCACATAGCACACATGGGTCCTGGAGATGGAATACAGATCCTAAAAGACCTGCCCATG
Seq C2 exon
AACCCACGGCCTCAGGAAAGCCGGACAGTATTCAGTGGCTCCGTCAGTATTCCCTCCATCACCAAGTCCCGCCCTGAGCCAGGCCGCTCCATGAGTGCCAGCAGTGGCCTGTCTGCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002841_MULTIEX1-1/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.843 A=0.975 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0078623=PBD=PD(21.9=35.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTGTAGTTCCTGAAACATCAGA
R:
CACTGCTGGCACTCATGGAG
Band lengths:
220-338
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]