HsaEX6037801 @ hg19
Exon Skipping
Gene
ENSG00000162714 | ZNF496
Description
zinc finger protein 496 [Source:HGNC Symbol;Acc:23713]
Coordinates
chr1:247492491-247495045:-
Coord C1 exon
chr1:247494734-247495045
Coord A exon
chr1:247493268-247493383
Coord C2 exon
chr1:247492491-247492917
Length
116 bp
Sequences
Splice sites
3' ss Seq
GCATGTCTTTGTCATTCCAGCTC
3' ss Score
6.4
5' ss Seq
AAGGTACCA
5' ss Score
7.87
Exon sequences
Seq C1 exon
GGCCCGCGCCCGGCCTCCGCGGCGCCGCCTCCCAGCCCAGAGCCCAGCGCTCAGGAAGGTGCGGGCGGGGGAGAAAGCAACACCATTGTTTTTCAGGCGCCTCCATTTGCCCCCGAGCCGAGCCGTGGCTTTCCGGATGATCGGGAGACGCGGTCTGGACGGGCCGGGAAAGGAGCCGGGCGCCTGCGGAGACCCCGCCTCAGCGAGTACGCCCGGCCGGGCGGGCTGGGAGGATGAGGACGGCTGCCCTGGACTTCCGCCGCCACAGGAGGGTTTTCGGCCGGACGCCGGGAGGGAGCTCCAGGCTGTGAG
Seq A exon
CTCCATTTGTAAAGGTCTTAATAACAAGAACAGTGACTTCGGCTCCGGAGCTTCAAGATAGTGGCCTGCTTGGCCTGCCCATCTCGGATCTCTCCAGGAGGACCCAGCCACCCAAG
Seq C2 exon
GGTCGTCTTCTGCTGCTGACCCCCATCAAATCCCATCATGCCCACAGCCCTGTGCCCCCGAGTCTTGGCTCCGAAGGAAAGTGAGGAGCCCAGGAAAATGAGGAGCCCACCTGGAGAGAACCCTAGCCCCCAGGGGGAGCTTCCCAGCCCCGAGTCCTCTCGGCGTCTCTTCCGCCGTTTCCGCTACCAGGAGGCGGCGGGCCCCCGGGAGGCCCTGCAGCGCCTCTGGGACCTGTGCGGGGGCTGGCTGCGGCCTGAGAGGCACACCAAGGAGCAGATTCTGGAGCTGCTGGTGCTGGAGCAGTTCCTGGCCATCCTGCCCCGGGAGATCCAGAGCTGGGTGCGGGCGCAGGAGCCTGAGAGCGGAGAGCAGGCTGTGGCCGCGGTGGAGGCACTGGAACGGGAGCCCGGGAGACCCTGGCAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162714-'1-4,'1-3,3-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.321
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0202312=SCAN=PU(97.9=72.3)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTTTTCAGGCGCCTCCATT
R:
GATTTGATGGGGGTCAGCAGC
Band lengths:
258-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)