HsaEX6037801 @ hg38
Exon Skipping
Gene
ENSG00000162714 | ZNF496
Description
zinc finger protein 496 [Source:HGNC Symbol;Acc:HGNC:23713]
Coordinates
chr1:247329189-247331743:-
Coord C1 exon
chr1:247331432-247331743
Coord A exon
chr1:247329966-247330081
Coord C2 exon
chr1:247329189-247329615
Length
116 bp
Sequences
Splice sites
3' ss Seq
GCATGTCTTTGTCATTCCAGCTC
3' ss Score
6.4
5' ss Seq
AAGGTACCA
5' ss Score
7.87
Exon sequences
Seq C1 exon
GGCCCGCGCCCGGCCTCCGCGGCGCCGCCTCCCAGCCCAGAGCCCAGCGCTCAGGAAGGTGCGGGCGGGGGAGAAAGCAACACCATTGTTTTTCAGGCGCCTCCATTTGCCCCCGAGCCGAGCCGTGGCTTTCCGGATGATCGGGAGACGCGGTCTGGACGGGCCGGGAAAGGAGCCGGGCGCCTGCGGAGACCCCGCCTCAGCGAGTACGCCCGGCCGGGCGGGCTGGGAGGATGAGGACGGCTGCCCTGGACTTCCGCCGCCACAGGAGGGTTTTCGGCCGGACGCCGGGAGGGAGCTCCAGGCTGTGAG
Seq A exon
CTCCATTTGTAAAGGTCTTAATAACAAGAACAGTGACTTCGGCTCCGGAGCTTCAAGATAGTGGCCTGCTTGGCCTGCCCATCTCGGATCTCTCCAGGAGGACCCAGCCACCCAAG
Seq C2 exon
GGTCGTCTTCTGCTGCTGACCCCCATCAAATCCCATCATGCCCACAGCCCTGTGCCCCCGAGTCTTGGCTCCGAAGGAAAGTGAGGAGCCCAGGAAAATGAGGAGCCCACCTGGAGAGAACCCTAGCCCCCAGGGGGAGCTTCCCAGCCCCGAGTCCTCTCGGCGTCTCTTCCGCCGTTTCCGCTACCAGGAGGCGGCGGGCCCCCGGGAGGCCCTGCAGCGCCTCTGGGACCTGTGCGGGGGCTGGCTGCGGCCTGAGAGGCACACCAAGGAGCAGATTCTGGAGCTGCTGGTGCTGGAGCAGTTCCTGGCCATCCTGCCCCGGGAGATCCAGAGCTGGGTGCGGGCGCAGGAGCCTGAGAGCGGAGAGCAGGCTGTGGCCGCGGTGGAGGCACTGGAACGGGAGCCCGGGAGACCCTGGCAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162714-'1-8,'1-4,5-8=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.394
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0202312=SCAN=PU(97.9=72.3)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTTTTCAGGCGCCTCCATT
R:
GATTTGATGGGGGTCAGCAGC
Band lengths:
258-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains