BtaEX0041352 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000038284 | ZNF496
Description
zinc finger protein 496 [Source:HGNC Symbol;Acc:HGNC:23713]
Coordinates
chr7:41968446-41977737:-
Coord C1 exon
chr7:41977547-41977737
Coord A exon
chr7:41976050-41976166
Coord C2 exon
chr7:41968446-41968522
Length
117 bp
Sequences
Splice sites
3' ss Seq
GTCTGTCTTTGTCTTTTCAGCTC
3' ss Score
11.29
5' ss Seq
AAGGTACCA
5' ss Score
7.87
Exon sequences
Seq C1 exon
CGGAGCCGTGGTTTTCTGGATGAGCAGGAAACAGGATCTTGGCTAGCCAGGGACAGAGTGGCCCTCGCAGAGAACCCGCCTCAGGAAGGACACCCGGGAGACCGGGCTGGAAGGATGAGGAGCTGCCGCTGTAGACTTCCGCCGCAGGAGGGCTTTGAGGTAGACGCTGAGAAGGAGTTCCATGCTGTGAG
Seq A exon
CTCATTTTGTAAAGGTCTCAAGGGCAAGGACGGTGACTTTGGCTCTGAAGCCTCAAGATAGCGGCCTTCTCAGCTCGTCCATTTCAGGTCCCTTCCAGGAGGACCTGGCCATCGAAG
Seq C2 exon
TCCTGCAAGACACTTCCATTCTTCAGGAAGCGAGTTTGAGGGATGCACAGCAGGTGACTACCTTCCAGCTACCCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038284_MULTIEX1-2/4=1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGTGGTTTTCTGGATGAGCA
R:
GTAGTCACCTGCTGTGCATCC
Band lengths:
247-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development