MmuEX0053867 @ mm10
Exon Skipping
Gene
ENSMUSG00000020472 | Zkscan17
Description
zinc finger with KRAB and SCAN domains 17 [Source:MGI Symbol;Acc:MGI:2679270]
Coordinates
chr11:59503384-59505962:-
Coord C1 exon
chr11:59505828-59505962
Coord A exon
chr11:59504148-59504254
Coord C2 exon
chr11:59503384-59503810
Length
107 bp
Sequences
Splice sites
3' ss Seq
CATATTTTTTTTTCCTCCAGTTC
3' ss Score
9.69
5' ss Seq
AAGGTATCA
5' ss Score
7.22
Exon sequences
Seq C1 exon
GCGTCTCCCTTCGCTCCCAAGCCCAGCTGATGCATTCTAGAGGATCCCGAGACAGGGTTGGCCTGGCCAGGGACCGAGTCTGGCCCATGCATTGGAGCCGCCTCTGCCAAAACACCAGAGAGACCGAGCTGGAAG
Seq A exon
TTCAATTTGTGAAGACCTCAAGAACAGAGACGGTGACTTCGACTCCAAAGCTTCAAGATTGTGGCCTGCTGGGGCTATTATCCTCCAGGAGGACCTGTCCATCAAAG
Seq C2 exon
GGTCGTCTTCTGCCGCTGACCCCCATCAAATCCCATCATGCCCACAGCCCTGTGCCCACGAGTCTTGGCTCCAAAGGAAAGTGAGGAGCCCAGGAAAATGAGGAGTCCTCCTGGAGAGAACCCCAGCCCTCAGGGTGAGCCTCCCAGCCCAGAGTCCTCTCGACGCCTCTTCCGCCGCTTCCGCTACCAGGAGGCCGCAGGCCCTCGGGAGGCCCTGCAGCGCCTCTGGGAGCTGTGCCGGGGCTGGCTGAGGCTCGAAAGGCACACGAAGGAGCAGATCCTGGAGCTACTGGTGCTGGAGCAGTTCTTGGCTATCCTGCCGTGGGAGATCCAGAGCTGGGTGCGAGCCCAGGAGCCTGAGAGCGGAGAGCAGGCTGTGGCTGCAGTAGAGGCTCTGGAACGGGAGCCAGGGAGACCCTGGCAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020472-'5-13,'5-11,10-13
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.382
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0202312=SCAN=PU(97.9=72.3)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGCCCAGCTGATGCATTC
R:
GGGTTCTCTCCAGGAGGACTC
Band lengths:
242-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types