RnoEX6047459 @ rn6
Exon Skipping
Gene
ENSRNOG00000003129 | Zfp496
Description
zinc finger protein 496 [Source:RGD Symbol;Acc:1304611]
Coordinates
chr10:45849120-45851730:-
Coord C1 exon
chr10:45851534-45851730
Coord A exon
chr10:45849846-45849951
Coord C2 exon
chr10:45849120-45849547
Length
106 bp
Sequences
Splice sites
3' ss Seq
ACATATTTTTTTTTCTTCAGTTC
3' ss Score
9
5' ss Seq
AAGGTATCA
5' ss Score
7.22
Exon sequences
Seq C1 exon
GCGTCTCCCTTCGCTCCCAAGCCCAGCTGATGCATTCTAGAGGATCACGAGACAGGGTTGGCCTGGCCAGGGACCGAGTCTGGCCCATGCATTGGAGCCGCCTTGGCCAAGACACCAGAGAGACCGAGCTGGAAGGTGAGGATCTGCTCCCCTGCTGTCCCCAGGCTTCGAGGTGAAGAGCCAGCGAATCTGAAAGA
Seq A exon
TTCAATTTGTGAAGACCTCAAGAACAGAGACAGTGACTTTGTCTCCAAAGCGTCCAGATTATCGCCGCCTGGGGCTATATCCTCCGGGAGGACCTGCCCATCAAAG
Seq C2 exon
GGTCGTCTTCTGCCGCTGACCCTCCATCAAATCCCATCATGCCCACAGCCCTGTGCCCACGAGTCTTGGCTCCAAAGGAAAGCGAGGAGCCCAGGAAAATGCGGAGTCCTCCTGGAGAGAACCCCAGCCCTCAGGGTGAGCCTCCCAGCCCAGAGTCCTCTCGACGCCTCTTCCGCCGGTTCCGCTACCAGGAGGCCGCAGGCCCTCGGGAGGCCCTGCAGCGCCTCTGGGAGCTGTGCCGGGGCTGGCTGAGGCTCGAAAGGCACACGAAGGAGCAGATCCTGGAACTACTGGTGCTGGAGCAGTTCTTGGCTATCCTGCCGTGGGAGATCCAGAGCTGGGTGCGTGCCCAGGAGCCTGAGAGCGGAGAGCAGGCTGTGGCTGCAGTAGAGGCTCTGGAACGGGAGCCAGGGAGACCCTGGCAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003129-'4-4,'4-2,8-4=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.400
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0202312=SCAN=PU(97.9=72.3)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGCCCAGCTGATGCATTCT
R:
CTTTGGAGCCAAGACTCGTGG
Band lengths:
257-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]