BtaEX0041354 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000038284 | ZNF496
Description
zinc finger protein 496 [Source:HGNC Symbol;Acc:HGNC:23713]
Coordinates
chr7:41968446-41975568:-
Coord C1 exon
chr7:41975275-41975568
Coord A exon
chr7:41974680-41974863
Coord C2 exon
chr7:41968446-41968522
Length
184 bp
Sequences
Splice sites
3' ss Seq
AGCCCTCTCTGGGATTGCAGCTC
3' ss Score
4.72
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
Exon sequences
Seq C1 exon
GGTGAGCTTCCCAATCCCGAGTCCTCCCGCCGCCTCTTCCGACGTTTCTGCTACCAGGAGGCTGCAGGCCCCCGGGAGGCCCTACACCGCCTCTGGGACCTATGCCGGGGCTGGCTGCGACCTGAAAGGCACACCAAGGAGCAAATCCTGGAGCTGCTGGTGCTGGAGCAGTTCTTGGCCATCCTGCCCCGGGAGGTCCAGGGCTGGGTGCGGGCCCAGGAACCTGAGAGTGGTGATCAGGCTGTGTCTGCTGTGGAGGCCCTGGAACGAGAGCCAGGGAGACCCTGGCAATGG
Seq A exon
CTCAAGCACTGTGAAGACCCTGTGGTGATTGACGATGGGGACAGCCCTCCAGACCAAGAGCAAGAGCAGCTGCCAGCAGAGCCCCACAGTGACCTTGCAAAGAGCCAGGATGCCCAGCCCATAGCTCTGGCTCAGAGCCCTGGGCTTCCAAGCAGGCTCTCAGGCCAGCTCAGCGGGGACCCAG
Seq C2 exon
TCCTGCAAGACACTTCCATTCTTCAGGAAGCGAGTTTGAGGGATGCACAGCAGGTGACTACCTTCCAGCTACCCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038284_MULTIEX1-4/4=3-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.128 A=0.887 C2=NA
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PU(97.9=95.9)
A:
PF0202312=SCAN=PD(0.1=0.0)
C2:
NA
Main Inclusion Isoform:
ENSBTAT00000057172fB8020
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGGCACACCAAGGAGCAAA
R:
GGGGGTAGCTGGAAGGTAGTC
Band lengths:
246-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development