MmuEX6085772 @ mm10
Exon Skipping
Gene
ENSMUSG00000020472 | Zkscan17
Description
zinc finger with KRAB and SCAN domains 17 [Source:MGI Symbol;Acc:MGI:2679270]
Coordinates
chr11:59499544-59503810:-
Coord C1 exon
chr11:59503384-59503810
Coord A exon
chr11:59502920-59503100
Coord C2 exon
chr11:59499544-59499620
Length
181 bp
Sequences
Splice sites
3' ss Seq
GCTGCTTTCTGGGATTGCAGCTC
3' ss Score
4.23
5' ss Seq
TAGGTATGC
5' ss Score
7.53
Exon sequences
Seq C1 exon
GGTCGTCTTCTGCCGCTGACCCCCATCAAATCCCATCATGCCCACAGCCCTGTGCCCACGAGTCTTGGCTCCAAAGGAAAGTGAGGAGCCCAGGAAAATGAGGAGTCCTCCTGGAGAGAACCCCAGCCCTCAGGGTGAGCCTCCCAGCCCAGAGTCCTCTCGACGCCTCTTCCGCCGCTTCCGCTACCAGGAGGCCGCAGGCCCTCGGGAGGCCCTGCAGCGCCTCTGGGAGCTGTGCCGGGGCTGGCTGAGGCTCGAAAGGCACACGAAGGAGCAGATCCTGGAGCTACTGGTGCTGGAGCAGTTCTTGGCTATCCTGCCGTGGGAGATCCAGAGCTGGGTGCGAGCCCAGGAGCCTGAGAGCGGAGAGCAGGCTGTGGCTGCAGTAGAGGCTCTGGAACGGGAGCCAGGGAGACCCTGGCAGTGG
Seq A exon
CTCAAGCACTGTGAAGACCCGGTGGTGATTGACGATGGCGACGGGCCTGCTGCGCCTCAGGACCTGGAACAAGAACGAATGTCAGCAGAGTCCCAGAGCTACCCTGATGCCCCGCCTGGGGCTCTAGTACAGGGCACTGGGCTTCTAAGCAGATCACCAGGCCAGCCTAGCGAAGACTTAG
Seq C2 exon
TTCCGCAAGATGCGTTCGTTGTGCAGGAGCAGAGCATCAGGGATGCCCAGCCCGTGGCCACCTGCCAGCTTCCCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020472-'12-18,'12-15,13-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.382 A=0.885 C2=0.769
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PU(97.9=72.3)
A:
PF0202312=SCAN=PD(0.1=0.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGAAAGGCACACGAAGGAG
R:
GGGGAAGCTGGCAGGTGG
Band lengths:
249-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types