HsaEX6037803 @ hg38
Exon Skipping
Gene
ENSG00000162714 | ZNF496
Description
zinc finger protein 496 [Source:HGNC Symbol;Acc:HGNC:23713]
Coordinates
chr1:247323154-247329615:-
Coord C1 exon
chr1:247329189-247329615
Coord A exon
chr1:247328683-247328866
Coord C2 exon
chr1:247323154-247323230
Length
184 bp
Sequences
Splice sites
3' ss Seq
AGCTGTCTCTGGGATTGCAGCTC
3' ss Score
3.8
5' ss Seq
CAGGTATGC
5' ss Score
9.37
Exon sequences
Seq C1 exon
GGTCGTCTTCTGCTGCTGACCCCCATCAAATCCCATCATGCCCACAGCCCTGTGCCCCCGAGTCTTGGCTCCGAAGGAAAGTGAGGAGCCCAGGAAAATGAGGAGCCCACCTGGAGAGAACCCTAGCCCCCAGGGGGAGCTTCCCAGCCCCGAGTCCTCTCGGCGTCTCTTCCGCCGTTTCCGCTACCAGGAGGCGGCGGGCCCCCGGGAGGCCCTGCAGCGCCTCTGGGACCTGTGCGGGGGCTGGCTGCGGCCTGAGAGGCACACCAAGGAGCAGATTCTGGAGCTGCTGGTGCTGGAGCAGTTCCTGGCCATCCTGCCCCGGGAGATCCAGAGCTGGGTGCGGGCGCAGGAGCCTGAGAGCGGAGAGCAGGCTGTGGCCGCGGTGGAGGCACTGGAACGGGAGCCCGGGAGACCCTGGCAGTGG
Seq A exon
CTCAAGCACTGTGAAGACCCTGTGGTGATTGATGATGGGGACAGCCCTCTGGACCAGGAGCAGGAGCAGCTGCCGGTAGAGCCCCACAGCGACCTTGCAAAGAACCAGGATGCCCAGCCCATAACCCTGGCACAGTGCCTGGGGCTCCCAAGCAGACCACCAAGCCAGCTCAGCGGGGACCCAG
Seq C2 exon
TTCTGCAAGATGCTTTCCTTCTTCAGGAAGAGAATGTGCGGGACACACAGCAGGTGACCACCCTCCAGCTACCCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162714_MULTIEX1-1/5=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.394 A=0.694 C2=0.692
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PU(97.9=72.3)
A:
PF0202312=SCAN=PD(0.1=0.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGAGAGGCACACCAAGGAG
R:
GGTAGCTGGAGGGTGGTCAC
Band lengths:
247-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains