HsaEX6037803 @ hg19
Exon Skipping
Gene
ENSG00000162714 | ZNF496
Description
zinc finger protein 496 [Source:HGNC Symbol;Acc:23713]
Coordinates
chr1:247486456-247492547:-
Coord C1 exon
chr1:247492491-247492547
Coord A exon
chr1:247491985-247492168
Coord C2 exon
chr1:247486456-247486532
Length
184 bp
Sequences
Splice sites
3' ss Seq
AGCTGTCTCTGGGATTGCAGCTC
3' ss Score
3.8
5' ss Seq
CAGGTATGC
5' ss Score
9.37
Exon sequences
Seq C1 exon
CAGGCTGTGGCCGCGGTGGAGGCACTGGAACGGGAGCCCGGGAGACCCTGGCAGTGG
Seq A exon
CTCAAGCACTGTGAAGACCCTGTGGTGATTGATGATGGGGACAGCCCTCTGGACCAGGAGCAGGAGCAGCTGCCGGTAGAGCCCCACAGCGACCTTGCAAAGAACCAGGATGCCCAGCCCATAACCCTGGCACAGTGCCTGGGGCTCCCAAGCAGACCACCAAGCCAGCTCAGCGGGGACCCAG
Seq C2 exon
TTCTGCAAGATGCTTTCCTTCTTCAGGAAGAGAATGTGCGGGACACACAGCAGGTGACCACCCTCCAGCTACCCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162714-'4-9,'4-7,6-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.321 A=0.516 C2=0.323
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PU(97.9=72.3)
A:
PF0202312=SCAN=PD(0.1=0.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGTGGAGGCACTGGAA
R:
CGGGGGTAGCTGGAGGGT
Band lengths:
122-306
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)