Special

MmuEX6085772 @ mm9

Exon Skipping

Gene
ENSMUSG00000020472 | Zkscan17
Description
zinc finger with KRAB and SCAN domains 17 [Source:MGI Symbol;Acc:MGI:2679270]
Coordinates
chr11:59313046-59317312:-
Coord C1 exon
chr11:59316886-59317312
Coord A exon
chr11:59316422-59316602
Coord C2 exon
chr11:59313046-59313122
Length
181 bp
Sequences
Splice sites
3' ss Seq
GCTGCTTTCTGGGATTGCAGCTC
3' ss Score
4.23
5' ss Seq
TAGGTATGC
5' ss Score
7.53
Exon sequences
Seq C1 exon
GGTCGTCTTCTGCCGCTGACCCCCATCAAATCCCATCATGCCCACAGCCCTGTGCCCACGAGTCTTGGCTCCAAAGGAAAGTGAGGAGCCCAGGAAAATGAGGAGTCCTCCTGGAGAGAACCCCAGCCCTCAGGGTGAGCCTCCCAGCCCAGAGTCCTCTCGACGCCTCTTCCGCCGCTTCCGCTACCAGGAGGCCGCAGGCCCTCGGGAGGCCCTGCAGCGCCTCTGGGAGCTGTGCCGGGGCTGGCTGAGGCTCGAAAGGCACACGAAGGAGCAGATCCTGGAGCTACTGGTGCTGGAGCAGTTCTTGGCTATCCTGCCGTGGGAGATCCAGAGCTGGGTGCGAGCCCAGGAGCCTGAGAGCGGAGAGCAGGCTGTGGCTGCAGTAGAGGCTCTGGAACGGGAGCCAGGGAGACCCTGGCAGTGG
Seq A exon
CTCAAGCACTGTGAAGACCCGGTGGTGATTGACGATGGCGACGGGCCTGCTGCGCCTCAGGACCTGGAACAAGAACGAATGTCAGCAGAGTCCCAGAGCTACCCTGATGCCCCGCCTGGGGCTCTAGTACAGGGCACTGGGCTTCTAAGCAGATCACCAGGCCAGCCTAGCGAAGACTTAG
Seq C2 exon
TTCCGCAAGATGCGTTCGTTGTGCAGGAGCAGAGCATCAGGGATGCCCAGCCCGTGGCCACCTGCCAGCTTCCCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020472-'9-11,'9-10,10-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact





	

	
ORF disruption upon sequence exclusion





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.381 A=0.873 C2=0.692
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF0202312=SCAN=PU(97.9=72.3)

							
A:
PF0202312=SCAN=PD(0.1=0.0)

							
C2:
NO

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000013262





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000013262f5631A, ENSMUSP00000013262f754A, ENSMUSP00000098709
          









    
Other Skipping Isoforms:
NA
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
chr1:247328683-247328866 
HIGH PSI
HsaEX6037803
(ZNF496)
Human
(hg19)
chr1:247491985-247492168 
HIGH PSI
HsaEX6037803
(ZNF496)
Rat
(rn6)
chr10:45848669-45848846 
HIGH PSI
RnoEX6047461
(Zfp496)
Cow
(bosTau6)
chr7:41974680-41974863 
ALTERNATIVE
BtaEX0041354
(ZNF496)
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
CTCGAAAGGCACACGAAGGAG

				
R: 
GGGGAAGCTGGCAGGTGG

				
Band lengths: 
249-430

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]










Retrieved from "https://vastdb.crg.eu/wiki/Special:VastDB"