RnoEX6047461 @ rn6
Exon Skipping
Gene
ENSRNOG00000003129 | Zfp496
Description
zinc finger protein 496 [Source:RGD Symbol;Acc:1304611]
Coordinates
chr10:45845549-45849547:-
Coord C1 exon
chr10:45849120-45849547
Coord A exon
chr10:45848669-45848846
Coord C2 exon
chr10:45845549-45845625
Length
178 bp
Sequences
Splice sites
3' ss Seq
TGCTTTCTCTGGGATTGCAGCTC
3' ss Score
5.37
5' ss Seq
CAGGTATGC
5' ss Score
9.37
Exon sequences
Seq C1 exon
GGTCGTCTTCTGCCGCTGACCCTCCATCAAATCCCATCATGCCCACAGCCCTGTGCCCACGAGTCTTGGCTCCAAAGGAAAGCGAGGAGCCCAGGAAAATGCGGAGTCCTCCTGGAGAGAACCCCAGCCCTCAGGGTGAGCCTCCCAGCCCAGAGTCCTCTCGACGCCTCTTCCGCCGGTTCCGCTACCAGGAGGCCGCAGGCCCTCGGGAGGCCCTGCAGCGCCTCTGGGAGCTGTGCCGGGGCTGGCTGAGGCTCGAAAGGCACACGAAGGAGCAGATCCTGGAACTACTGGTGCTGGAGCAGTTCTTGGCTATCCTGCCGTGGGAGATCCAGAGCTGGGTGCGTGCCCAGGAGCCTGAGAGCGGAGAGCAGGCTGTGGCTGCAGTAGAGGCTCTGGAACGGGAGCCAGGGAGACCCTGGCAGTGG
Seq A exon
CTCAAGCACTGTGAAGACCCCGTGGTAATTGATGACGGTGATGGGCCTGCGCCTCAGGATCTAGAACAAGAACGAATGTCTGCAGAGTCCCAGAGCAACCCTGATGCCCTGCCGGGGGCTCTAGCACAGGACCCTGGGCTCCTAAGCAGATCGCCAGGCCAGCCTAGTGAAGACCCAG
Seq C2 exon
TTCCGCAAGATGCTGTCCTTTCTCAGGAGCAGAGCGTCAGGGATGCCCAGCCGGTGACCACCTGCCAGCTTCCCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003129-'12-7,'12-6,13-7=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.400 A=0.867 C2=1.000
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PU(97.9=72.3)
A:
PF0202312=SCAN=PD(0.1=0.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGAAAGGCACACGAAGGAG
R:
GAAGCTGGCAGGTGGTCAC
Band lengths:
246-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]