HsaEX6048206 @ hg19
Exon Skipping
Gene
ENSG00000111799 | COL12A1
Description
collagen, type XII, alpha 1 [Source:HGNC Symbol;Acc:2188]
Coordinates
chr6:75833971-75836186:-
Coord C1 exon
chr6:75836067-75836186
Coord A exon
chr6:75834843-75834989
Coord C2 exon
chr6:75833971-75834087
Length
147 bp
Sequences
Splice sites
3' ss Seq
TTTTGTGGTTGTTAATAAAGGTT
3' ss Score
3.61
5' ss Seq
CATGTGAGT
5' ss Score
7.83
Exon sequences
Seq C1 exon
TGGGACTCCTTCCTCCTCAGAACATACACATCTCTGACGAATGGTATACAAGATTCAGGGTGTCCTGGGATCCTTCACCTTCTCCAGTTCTTGGATATAAAATAGTATATAAGCCAGTGG
Seq A exon
GTTCCAATGAGCCCATGGAAGCCTTTGTTGGAGAAATGACATCATATACCTTACACAATCTCAATCCCAGCACCACCTACGATGTGAATGTTTATGCTCAATATGATTCTGGACTCAGTGTCCCCTTGACAGATCAAGGCACTACAT
Seq C2 exon
TATATTTAAATGTAACAGATCTGAAAACTTACCAGATTGGGTGGGATACATTCTGTGTCAAATGGTCACCTCACCGGGCAGCCACCTCCTACAGGCTAAAACTAAGCCCTGCAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000111799-'51-55,'51-54,52-55=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.075
Domain overlap (PFAM):
C1:
PF0004116=fn3=PU(46.8=90.2)
A:
PF0004116=fn3=PD(51.9=82.0)
C2:
PF0004116=fn3=PU(46.8=92.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGACTCCTTCCTCCTCAGA
R:
CTGCAGGGCTTAGTTTTAGCCT
Band lengths:
234-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)