MmuEX6067486 @ mm10
Exon Skipping
Gene
ENSMUSG00000032332 | Col12a1
Description
collagen, type XII, alpha 1 [Source:MGI Symbol;Acc:MGI:88448]
Coordinates
chr9:79639967-79643986:-
Coord C1 exon
chr9:79643867-79643986
Coord A exon
chr9:79641449-79641595
Coord C2 exon
chr9:79639967-79640083
Length
147 bp
Sequences
Splice sites
3' ss Seq
TCCTTTTGTTGTTCTGAAAGGTT
3' ss Score
7.55
5' ss Seq
CATGTGAGT
5' ss Score
7.83
Exon sequences
Seq C1 exon
TGGGTCTGCTTCCTCCTCAGAACATACACATCTTCGATGAATGGTACACAAGGTTCCGAGTGTCCTGGGACCCTTCACCCTCACCAGTTCTTGGATATAAAATTGTGTACAAGCCAGTGG
Seq A exon
GTTCCAATGAGCCCATGGAAGCCTTTGTTGGAGAAGTGACATCATACACTTTACACAACCTCAATCCCAGCACTACCTATGACGTCAGTGTTTATGCACAGTATGACTCTGGACTCAGCGTTCCCCTCACAGATCAAGGCACCACAT
Seq C2 exon
TGTACTTAAATGTGACAGATCTGAAAACTTACCAGGTTGGATGGGATACATTCTGTGTCAAGTGGTCACCTCACCGGGCAGCCACCTCCTACAGGCTAAAGCTGAGTCCTGCAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032332-'52-54,'52-53,54-54=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.075
Domain overlap (PFAM):
C1:
PF0004116=fn3=PU(46.8=90.2)
A:
PF0004116=fn3=PD(51.9=82.0)
C2:
PF0004116=fn3=PU(46.8=92.5)
Main Skipping Isoform:
ENSMUST00000071750fB8021
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGTCTGCTTCCTCCTCAG
R:
CTGCAGGACTCAGCTTTAGCC
Band lengths:
234-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types