HsaEX6055237 @ hg19
Exon Skipping
Gene
ENSG00000168026 | TTC21A
Description
tetratricopeptide repeat domain 21A [Source:HGNC Symbol;Acc:30761]
Coordinates
chr3:39156076-39161511:+
Coord C1 exon
chr3:39156076-39156233
Coord A exon
chr3:39159560-39159644
Coord C2 exon
chr3:39161413-39161511
Length
85 bp
Sequences
Splice sites
3' ss Seq
GCCTCCTCTTCTTCCTTCAGAAT
3' ss Score
11.2
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
GCAATGTACTTCATGATGCAGCAGAACTACTCAGAGGCCCTGGAGGTGGTGAACCAGATCACTGTGACTTCAGGGAGCTTCCTGCCAGCCCTCGTCCTGAAGATGCAGCTGTTCTTAGCTCGGCAGGACTGGGAGCAGACAGTAGAAATGGGACACAG
Seq A exon
AATCCTAGAAAAAGATGAGAGCAATATTGATGCCTGCCAAATTCTAACCGTGCATGAGCTTGCAAGAGAAGGAAACATGACCACA
Seq C2 exon
GCTACCAATCACGTTAGAAATCTGATTAAGGCACTAGAGACAAGGGAACCCGAAAATCCAAGCCTCCATCTTAAAAAAATTATTGTGGTTAGCCGACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168026-'8-6,'8-5,9-6=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.166 A=0.072 C2=0.000
Domain overlap (PFAM):
C1:
PF134241=TPR_12=PD(32.2=35.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACTGTGACTTCAGGGAGCT
R:
GGAGGCTTGGATTTTCGGGTT
Band lengths:
167-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)