RnoEX0094640 @ rn6
Exon Skipping
Gene
ENSRNOG00000034089 | Ttc21a
Description
tetratricopeptide repeat domain 21A [Source:RGD Symbol;Acc:1308806]
Coordinates
chr8:128629910-128633929:+
Coord C1 exon
chr8:128629910-128630067
Coord A exon
chr8:128631597-128631681
Coord C2 exon
chr8:128633831-128633929
Length
85 bp
Sequences
Splice sites
3' ss Seq
GTCTTCTCTTTCCATCTCAGAAT
3' ss Score
10.17
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
Exon sequences
Seq C1 exon
GCAAAGTACTTCATGACACAACAGAACTTCTCCGGGGCCCTGGAGGTGGTGAACCAGGTCACCTTGGCCTACAGCAACTTCCTGCCGGCCTTAGTCCTGAAGATGAAACTGTTCCTGGCTCGGCAGGATTGGGAGCAGACAATAGAAACCGGACAGAG
Seq A exon
AATCCTTGAAAAAGACGAGAACAATATCGATGCCTGGCAAATCCTAGCGGTGCATGAGCTCGTGAAAGAAGGAAACACAGACAGA
Seq C2 exon
GCTGCCGACCGTGTCAGAAACCTAATCAAGGCGCTAGAGACTGGAGAGCCCCAAAATCCAAACCTACATCTTAAGAAGATCCTTGCAGTCAGCAGGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000034089-'9-7,'9-6,10-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAACAGAACTTCTCCGGGG
R:
TTAGGTTTCTGACACGGTCGG
Band lengths:
167-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]