MmuEX6069873 @ mm10
Exon Skipping
Gene
ENSMUSG00000032514 | Ttc21a
Description
tetratricopeptide repeat domain 21A [Source:MGI Symbol;Acc:MGI:1921302]
Coordinates
chr9:119943817-119945581:+
Coord C1 exon
chr9:119943817-119943974
Coord A exon
chr9:119944945-119945029
Coord C2 exon
chr9:119945483-119945581
Length
85 bp
Sequences
Splice sites
3' ss Seq
GACTTCCCTTTCTATTGCAGAAT
3' ss Score
11.07
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
Exon sequences
Seq C1 exon
GCAACGTACTTCATGACACAACAGAACTTCTCTGGGGCCCTGGAGGTGGCGAACCAGGTCACCTTGGCCTGCAGCAACTTCCTGCCCGCTTTAGTCCTGAAGATGAAGCTGTTCCTGGCTCGGCAGGATTGGGATCAGACGATAGAAACCGGACAAAG
Seq A exon
AATCCTTGAAAAAGACGAAAACAATATTGATGCCTGGCAAATTCTAGCTGTGCACGAGCTGGTGAAAGAAGGGAACACGGACAGA
Seq C2 exon
GCTGCCGACCGGGTCAGAAACCTCATCAAGGCGCTAGAGACTGGAGAGCCCCACAATCCAAACCTACATCTTAAGAAGATCCTTGTAATCAGCAGGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032514-'1-10,'1-9,8-10=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAACTTCTCTGGGGCCCTG
R:
CTCCAGTCTCTAGCGCCTTGA
Band lengths:
182-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types