BtaEX0038090 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010477 | TTC21A
Description
tetratricopeptide repeat domain 21A [Source:HGNC Symbol;Acc:HGNC:30761]
Coordinates
chr22:12490588-12496881:+
Coord C1 exon
chr22:12490588-12490745
Coord A exon
chr22:12494692-12494776
Coord C2 exon
chr22:12496783-12496881
Length
85 bp
Sequences
Splice sites
3' ss Seq
GGCTCCTCTTCCTGTTTCAGAAT
3' ss Score
10.36
5' ss Seq
GTAGTAAGT
5' ss Score
8.01
Exon sequences
Seq C1 exon
GTGATGTACTTCATGATACTGCAGAACTACTCGGGGGCCCTTGAGGTGGTGAACCAGATCACCGTCACCTGCGGGAGCTTCCTGCCTGCCTTGGTCCTAAAGATGCAGCTGTTCCTGGCTCGGCAGGACTGGGAGCAGACGGTAGAAATGGGACACAG
Seq A exon
AATCCTCGAAAAAGACAAAAGCAATATCGATGCCTGCCAGATTCTAGCTGTGCATGAGCTCGCAAGAGAAGGAAACATGACCGTA
Seq C2 exon
GCTGCCGAGCACGTTAGGAATCTGATTAAGGCACTGGAAACAAGAGAGCCCGAAAATCCAAGCCTCCATCTTAAAAAAATTCTTGTGGTGAGCAGACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010477_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAACCAGATCACCGTCACC
R:
ATGGAGGCTTGGATTTTCGGG
Band lengths:
179-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development