HsaEX6063443 @ hg38
Exon Skipping
Gene
ENSG00000187239 | FNBP1
Description
formin binding protein 1 [Source:HGNC Symbol;Acc:HGNC:17069]
Coordinates
chr9:129957360-129979374:-
Coord C1 exon
chr9:129979318-129979374
Coord A exon
chr9:129978465-129978612
Coord C2 exon
chr9:129957360-129957462
Length
148 bp
Sequences
Splice sites
3' ss Seq
GCGTGTGTTCTGTTCCATAGGTA
3' ss Score
11.23
5' ss Seq
TCAGTAAGC
5' ss Score
5.59
Exon sequences
Seq C1 exon
GAATCTTTCAAAGAAGTACCAACCTAAAAAGAACTCGAAGGAGGAAGAAGAATACAA
Seq A exon
GTATACGTCATGTAAAGCTTTCATTTCCAACCTGAACGAAATGAATGATTACGCAGGGCAGCATGAAGTTATCTCCGAGAACATGGCATCACAGATCATTGTGGACTTGGCACGCTATGTTCAGGAACTGAAACAGGAGAGGAAATCA
Seq C2 exon
TAAAAGGCGATTTGAACGCGATTGCAAAGAGGCGGACAGGGCGCAGCAGTACTTTGAGAAAATGGACGCTGACATCAATGTCACAAAAGCGGATGTTGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187239_MULTIEX2-1/3=C1-3
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.207 A=0.089 C2=0.142
Domain overlap (PFAM):
C1:
PF0061118=FCH=FE(34.5=100),PF057016=WEMBL=PU(4.0=30.0)
A:
PF0061118=FCH=PD(29.8=56.0),PF057016=WEMBL=PU(29.6=80.0)
C2:
PF057016=WEMBL=FE(25.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATCTTTCAAAGAAGTACCAACCT
R:
TCAACATCCGCTTTTGTGACA
Band lengths:
156-304
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains