GgaEX1025308 @ galGal4
Exon Skipping
Gene
ENSGALG00000004088 | FNBP1
Description
formin binding protein 1 [Source:HGNC Symbol;Acc:HGNC:17069]
Coordinates
chr17:5775656-5787742:-
Coord C1 exon
chr17:5787686-5787742
Coord A exon
chr17:5784965-5785112
Coord C2 exon
chr17:5775656-5775718
Length
148 bp
Sequences
Splice sites
3' ss Seq
TGCATTTTTGTCCTCTGCAGGTA
3' ss Score
12.07
5' ss Seq
TCGGTAACT
5' ss Score
6.25
Exon sequences
Seq C1 exon
GAATCTTTCAAAGAAATATCAACCCAAAAAGAACTCCAAAGAAGAGGAAGAGTACAG
Seq A exon
GTACACATCAACTAGAGCCTTCCTAGCCACTTTAAATGAAATGAATGACTATGCCGGACAGCATGAGGTCATTTCAGAGAACATGACCTCTCTTATCATTGGAGAGTTAACTCGCTATGTGCAGGAGCTGAAACAAGAGAGGAAATCG
Seq C2 exon
CACTTCCACGATGGCAGAAAGGCACAACAGCACATTGAAACTTGCTGGAAACAACTTGAAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004088_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=0.100 C2=0.238
Domain overlap (PFAM):
C1:
PF0061118=FCH=FE(20.4=100)
A:
PF0061118=FCH=PD(30.1=56.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AATATCAACCCAAAAAGAACTCCAA
R:
AGCTTCAAGTTGTTTCCAGCA
Band lengths:
106-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]