DreEX6048520 @ danRer10
Exon Skipping
Gene
ENSDARG00000036156 | fnbp1a
Description
formin binding protein 1a [Source:ZFIN;Acc:ZDB-GENE-081105-105]
Coordinates
chr8:11582304-11587663:-
Coord C1 exon
chr8:11587607-11587663
Coord A exon
chr8:11586608-11586755
Coord C2 exon
chr8:11582304-11582366
Length
148 bp
Sequences
Splice sites
3' ss Seq
TTTTTCCGATTTCCAATCAGGTA
3' ss Score
10.07
5' ss Seq
TCGGTAAGT
5' ss Score
11.78
Exon sequences
Seq C1 exon
GAATCTGTCTAAGAAGTATCAGCTCAAGAAGAACTCGAAAGAAGAGGAGGAATACAA
Seq A exon
GTACACAACATGTCGAGCGTTTCTGATGACCTTAAATGAGCTGAACGACTACGCAGGCCAACACGAAGTCATTGCGGAAAACCTGTCCTCCCAGATCATCGCTGAACTGAGCCGCTACACCCAAGAACTAAAAGCTGAACGCAAATCG
Seq C2 exon
CATTTCCATGATGGCCGCCGAGCGCAGCAGCACATTGAGAATTCCTGGAAGCAGCTGGAATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000036156-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.050 A=0.060 C2=0.524
Domain overlap (PFAM):
C1:
PF0061118=FCH=FE(20.2=100)
A:
PF0061118=FCH=PD(29.8=56.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGTCTAAGAAGTATCAGCTCAAGA
R:
GATTCCAGCTGCTTCCAGGAA
Band lengths:
116-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]