BtaEX6046667 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020313 | FNBP1
Description
Bos taurus formin binding protein 1 (FNBP1), mRNA. [Source:RefSeq mRNA;Acc:NM_001206712]
Coordinates
chr11:100345205-100361955:-
Coord C1 exon
chr11:100361899-100361955
Coord A exon
chr11:100361051-100361198
Coord C2 exon
chr11:100345205-100345267
Length
148 bp
Sequences
Splice sites
3' ss Seq
GTGTGTGTTCTGTTCTGTAGGTA
3' ss Score
11.2
5' ss Seq
TCGGTAACT
5' ss Score
6.25
Exon sequences
Seq C1 exon
GAACCTTTCAAAGAAATACCAACCTAAAAAGAACTCGAAGGAGGAAGAAGAATACAG
Seq A exon
GTATACGGCTTGCCAAGCCTTCCTTGCCACCCTGAATGAAATGAACGATTATGCTGGGCAGCATGAACTCATCTCCGAGAATATGACCTCTCAGATCATTGTGGAGTTAGTGCGCTACGTCCAGGAACTGAAGCAGGAGAGGAAATCG
Seq C2 exon
CACTTTCACGATGGACGGAAGGCACAGCAACACATAGAGATGTGCTGGAAGCAACTAGAATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020313-'4-7,'4-6,5-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.300 A=0.070 C2=0.226
Domain overlap (PFAM):
C1:
PF0061118=FCH=FE(20.2=100)
A:
PF078236=CPDase=PU(3.8=27.3)
C2:
PF078236=CPDase=FE(12.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACCTTTCAAAGAAATACCAACCT
R:
CATCTCTATGTGTTGCTGTGCCT
Band lengths:
99-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]