RnoEX0036508 @ rn6
Exon Skipping
Gene
ENSRNOG00000008258 | Fnbp1
Description
formin binding protein 1 [Source:RGD Symbol;Acc:621350]
Coordinates
chr3:9914113-9927802:-
Coord C1 exon
chr3:9927746-9927802
Coord A exon
chr3:9926729-9926876
Coord C2 exon
chr3:9914113-9914175
Length
148 bp
Sequences
Splice sites
3' ss Seq
CCTGTGTGATCTGTCCTCAGGTA
3' ss Score
11.28
5' ss Seq
TCGGTAATG
5' ss Score
6.42
Exon sequences
Seq C1 exon
GAATCTTTCAAAGAAATACCAACCCAAGAAGAACTCGAAGGAAGAAGAGGAATACAA
Seq A exon
GTACACGGCGTGTAAAGCGTTTCTTTCCACCCTGAATGAGTTGAATGACTACGCCGGGCAGCATGAGGTCATCTCCGAGAACATGACGTCACAGATCACGGTGGACCTGGTGCGCTACGTACAGGAGCTGAAGCAGGAGAGGAAATCG
Seq C2 exon
AATTTCCATGATGGACGGAAGGCTCAGCAGCACATAGAGACGTGCTGGAAGCAGCTGGAGTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008258-'1-4,'1-1,4-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.133 A=0.000 C2=0.236
Domain overlap (PFAM):
C1:
PF0061118=FCH=FE(20.7=100)
A:
PF0061118=FCH=PD(30.4=56.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCAAAGAAATACCAACCCAAGAAGA
R:
CGACTCCAGCTGCTTCCAG
Band lengths:
114-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]