DreEX0081367 @ danRer10
Exon Skipping
Gene
ENSDARG00000005679 | trip10a
Description
thyroid hormone receptor interactor 10a [Source:ZFIN;Acc:ZDB-GENE-041114-105]
Coordinates
chr3:54206857-54214833:-
Coord C1 exon
chr3:54214777-54214833
Coord A exon
chr3:54209394-54209541
Coord C2 exon
chr3:54206857-54206919
Length
148 bp
Sequences
Splice sites
3' ss Seq
ATCATATCGCTGTCTTTTAGATT
3' ss Score
8.95
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
GAATTTAACCAAGAAATACAGCCCTAAACGAGGCAGCAAAGAAGAGCAAGAATGCAG
Seq A exon
ATTCTCCAATCACCAGGCCTTTCTGGACATCCTGAACGAGATGAACGATTACGCGGGCCAGAGAGAGCTGATCGCCGAGAACATGATGATAAATATCTGCGTCGAGCTCAACAAGTACCTGCAGGAGCTCAAACAGGAGCGCAAGATG
Seq C2 exon
CATCTGTCAGAGGCCAAGAAATCCCAGCAGTCTCTGGAGGCCATGTACAAGCAGCTCGACAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005679_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.650 A=0.020 C2=0.524
Domain overlap (PFAM):
C1:
PF0061118=FCH=FE(20.2=100)
A:
PF0061118=FCH=PD(29.8=56.0),PF057016=WEMBL=PU(31.2=80.0)
C2:
PF057016=WEMBL=FE(15.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTAACCAAGAAATACAGCCCTAAACG
R:
TGTCGAGCTGCTTGTACATGG
Band lengths:
114-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]