MmuEX6078771 @ mm10
Exon Skipping
Gene
ENSMUSG00000019487 | Trip10
Description
thyroid hormone receptor interactor 10 [Source:MGI Symbol;Acc:MGI:2146901]
Coordinates
chr17:57250955-57253559:+
Coord C1 exon
chr17:57250955-57251011
Coord A exon
chr17:57253262-57253409
Coord C2 exon
chr17:57253497-57253559
Length
148 bp
Sequences
Splice sites
3' ss Seq
TGTTTGTCTCCTGCTGCCAGGTT
3' ss Score
9.13
5' ss Seq
ATGGTGAGG
5' ss Score
7.61
Exon sequences
Seq C1 exon
GAGCCTGGTGAAAAAGTATCTTCCCAAGAGACCTACCAAAGATGACCCTGAAGTCAA
Seq A exon
GTTCAGCCAGCAGCAGTCATTTGTCCAGCTTCTCCAGGAGGTCAATGACTTCGCAGGCCAGAGAGAGCTGGTGGCTGAGAGCCTCGGTATCCGAGTGTGTCTGGAGCTGGCTAAGTATTCACAGGAGATGAAGCAGGAGAGGAAGATG
Seq C2 exon
CACTTCCAGGAAGGTCGTCGGGCCCAGCAGCAGCTGGAGAATGGCTTCAAACAGCTGGAGAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000019487-'5-6,'5-4,8-6=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=0.100 C2=0.762
Domain overlap (PFAM):
C1:
PF0061118=FCH=FE(20.2=100)
A:
PF0061118=FCH=PD(29.8=56.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGGTGAAAAAGTATCTTCCCA
R:
TTCTCCAGCTGTTTGAAGCCA
Band lengths:
117-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types