BtaEX6038644 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000047424 | TRIP10
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:G3MYE4]
Coordinates
chr7:18968968-18970192:-
Coord C1 exon
chr7:18970136-18970192
Coord A exon
chr7:18969108-18969255
Coord C2 exon
chr7:18968968-18969030
Length
148 bp
Sequences
Splice sites
3' ss Seq
CCGCCTCCATCCCACCCCAGGTT
3' ss Score
8.27
5' ss Seq
ATGGTGGGT
5' ss Score
6.18
Exon sequences
Seq C1 exon
GAGCCTGGTGAAAAAATACATGCCCAAAAGACCTGCCAAAGATGACCCTGAATCCAA
Seq A exon
GTTCAGCCAGCAACAGTCCTTCGTGCAGATTCTGCAGGAGGTGAATGATTTTGCCGGCCAGCGGGAGCTGGTGGCTGAGAACCTCAGCGTGCGTGTATGTCTGGAGCTGGCCAAGTACTCGCAGGAGATGAAACAGGAGAGAAAGATG
Seq C2 exon
CACTTCCAAGAAGGTCGTCGGGCCCAGCAGCAGCTGGAAAGTGGCTTCAAGCAGCTGGAGAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047424-'2-4,'2-2,3-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.700 A=0.120 C2=0.667
Domain overlap (PFAM):
C1:
PF0061118=FCH=FE(22.1=100)
A:
PF0061118=FCH=PD(32.6=56.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATACATGCCCAAAAGACCTGC
R:
ATTCTCCAGCTGCTTGAAGCC
Band lengths:
106-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]