RnoEX0093817 @ rn6
Exon Skipping
Gene
ENSRNOG00000055524 | Trip10
Description
thyroid hormone receptor interactor 10 [Source:RGD Symbol;Acc:621145]
Coordinates
chr9:9698650-9700924:-
Coord C1 exon
chr9:9700868-9700924
Coord A exon
chr9:9698789-9698936
Coord C2 exon
chr9:9698650-9698712
Length
148 bp
Sequences
Splice sites
3' ss Seq
TGCTTGTCTCCTTCTGCCAGGTT
3' ss Score
9.99
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
Exon sequences
Seq C1 exon
GAGTCTGGTGAAAAAGTATCTTCCCAAGAGACCTGCCAAAGATGACCCCGAAATCAA
Seq A exon
GTTTAGCCAGCAACAGTCATTTGTCCAGCTTCTCCAGGAGGTCAATGATTTTGCAGGCCAACGAGAGCTGGTGGCCGAGAGCCTTGGCATCCGAGTGTGTCTGGAGCTGGCTAAGTATTCACAGGAGATGAAGCAAGAGAGGAAGATG
Seq C2 exon
CACTTCCAAGAAGGCCGTCGGGCCCAGCAGCAGCTGGAAAATGGCTTCAAACAGCTGGAGAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055524-'6-8,'6-5,8-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.217 A=0.100 C2=0.762
Domain overlap (PFAM):
C1:
PF0061118=FCH=FE(20.2=100)
A:
PF0061118=FCH=PD(29.8=56.0)
C2:
NO
Main Skipping Isoform:
ENSRNOT00000082341fB15648
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCTGGTGAAAAAGTATCTTCCCA
R:
TTCTCCAGCTGTTTGAAGCCA
Band lengths:
118-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]