HsaEX6063777 @ hg19
Exon Skipping
Gene
ENSG00000197859 | ADAMTSL2
Description
ADAMTS-like 2 [Source:HGNC Symbol;Acc:14631]
Coordinates
chr9:136399431-136402669:+
Coord C1 exon
chr9:136399431-136400039
Coord A exon
chr9:136401685-136401924
Coord C2 exon
chr9:136402527-136402669
Length
240 bp
Sequences
Splice sites
3' ss Seq
GGGTTCATCCTTCCCAACAGGGT
3' ss Score
8.86
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
Exon sequences
Seq C1 exon
TCCCCGGTAACCTCAGGCCAGCGGCTGCTCCGTCTGGACACCCGACATGTGGCCCCCAGTTCTGGACCCGGGAAGAAGGCCTCCCTGCTCGCCGCTCCTGGGCCGCCGCCGCCGGCAGCAGCCAACAGGCAGCTGGGCCGGCCTGGCCGGGCTCCAGAGGCGCAGAGCGGGTTAAAGTGTGCGCCAGGCCGGCCGGCGCGGGCGGGGGAGCGGCCTGGTGGGAAGTGTGAGTGTTCCTCCCCGTCTGCCTGACAGCTATAAAGGCGGCCGCCGGCGCAGAGCCGCCACTGGGCTGCGCCCCTCCCGGGAACCCCCTCTCTTGGATGCTCTTTGAAGTGGGAGAGGGAGGCGGCGCGGGGGAGGAGGGGAAGGGGAGAGGGAGGCCGGGCCGCAGCCTCTGCACTCACGCCGCCCCCGCACGCACAGCGCACCTGGCGCCGTCTGCCCTCCGCAGCGCTCGCCCCTTTCTCTGGGAGGACAACCTGCTGACCCGAAGCCAG
Seq A exon
GGTCTGCCAGACAACCACGACCAACTAGTCCCAGATAACCTTGAGGCCTGGGCACTGGCTGGGCCCCGAGGGCTCTTCCCAAAGCGTACCCTGGTCATCTGGAAGAGGATCGGAGCTGGCCTGGTGGTGACAGTGGCCTTGCTTCCTAGGATGGATGGCAGATGGCAATGTTCCTGCTGGGCCTGGTTCCTGCTGGTTCTGGCAGTTGTAGCTGGGGACACAGTGTCAACCGGGTCCACG
Seq C2 exon
GACAACAGCCCAACATCCAATAGCCTGGAGGGGGGCACCGACGCCACGGCCTTCTGGTGGGGGGAGTGGACCAAGTGGACGGCGTGTTCCCGCAGTTGCGGGGGTGGGGTGACATCCCAGGAGCGGCACTGCCTGCAGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197859-'1-3,'1-2,2-3=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.356 A=0.114 C2=0.250
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0009014=TSP_1=PU(49.1=56.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGTCTGCCTGACAGCTATA
R:
CCCCTCCAGGCTATTGGATGT
Band lengths:
294-534
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)