MmuEX6099841 @ mm9
Exon Skipping
Gene
ENSMUSG00000036040 | Adamtsl2
Description
ADAMTS-like 2 [Source:MGI Symbol;Acc:MGI:1925044]
Coordinates
chr2:26934899-26938044:+
Coord C1 exon
chr2:26934899-26935093
Coord A exon
chr2:26937224-26937314
Coord C2 exon
chr2:26937902-26938044
Length
91 bp
Sequences
Splice sites
3' ss Seq
GACGGGGTCTTGCTTCGTAGGAT
3' ss Score
7.56
5' ss Seq
TCCGTGAGT
5' ss Score
8.93
Exon sequences
Seq C1 exon
ACTGGGCTGAGAGCCCCTCCTGGGAACCCCCTCCCTTGAATGCTCTTTGAAGTGGGAGAGGGAGGCAGCTGGGGAAGCAGGACCAGAGACAGGCAGAGCCCGCACATCTCTGCACTCACCTTCCTGCACCGTGCACCTGGCAGTAGCTCTCACCCTTTTCTCTAAAAGGAGGACAACCTGCTGACCCTGGGTGAG
Seq A exon
GATGGATGGCAGACGGCAGCATCCACACTGGGCTTGGTCCTTGCTGGCTGTAGCAGTTGTGGCTGGGGGTGCGGCACCTACGGAGGCTTCC
Seq C2 exon
GACAACAGCCCCACATCCAACAGCCTAGAGGGAGGTGCTGACACCACTGCCTACTGGTGGGGGGAGTGGACCAAGTGGACAGCATGTTCCCGCAGTTGTGGGGGCGGGGTGACATCCCAGGAGCGCCACTGCCTTCAACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036040-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.333 C2=0.292
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0009014=TSP_1=PU(49.1=56.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACATCTCTGCACTCACCTT
R:
AACATGCTGTCCACTTGGTCC
Band lengths:
182-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: