RnoEX0006910 @ rn6
Exon Skipping
Gene
ENSRNOG00000027742 | Adamtsl2
Description
ADAMTS-like 2 [Source:RGD Symbol;Acc:1305459]
Coordinates
chr3:5624506-5627241:+
Coord C1 exon
chr3:5624506-5624693
Coord A exon
chr3:5626402-5626492
Coord C2 exon
chr3:5627099-5627241
Length
91 bp
Sequences
Splice sites
3' ss Seq
CACGGGGTCTCACTTCGTAGGAT
3' ss Score
8.07
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
Exon sequences
Seq C1 exon
GGCTGAGCGCCCCTCCTGGGAACCCCTCCCTTGAATGCTCTTTGAAGTGGGAGAGGGAGGCAGCTGGGGGAAGCAAGACCAGAGACAGGCAGAGCCCGCACATCTCTGTACTCACCTTCCTGCACCGTGCACCTGGCAGCTAGCTCTCACCCCTTTCTCTGGGAGGACAACCTGCTGAGCCTGGGGAG
Seq A exon
GATGGACAGCGGATGGCAACGCTCACGCTGGGCTTGGTCTTTGCTGGCCATGGCAGTTGTGGCCGGGGGTGCGGCATCTACCGAGGCTTCG
Seq C2 exon
GACAATAGCCCCACATCCAACAGCCTAGAGGGAGGTGCTGATGCCACTGCCTACTGGTGGGGAGAGTGGACCAAGTGGACTGCGTGTTCCCGCAGCTGTGGGGGCGGGGTGACATCCCAGGAGCGCCACTGCCTGCAACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027742-'0-2,'0-1,1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.200 C2=0.208
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0009014=TSP_1=PU(49.1=56.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGCACATCTCTGTACTCACC
R:
AGTCCACTTGGTCCACTCTCC
Band lengths:
174-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]