MmuEX6099841 @ mm10
Exon Skipping
Gene
ENSMUSG00000036040 | Adamtsl2
Description
ADAMTS-like 2 [Source:MGI Symbol;Acc:MGI:1925044]
Coordinates
chr2:27079379-27082524:+
Coord C1 exon
chr2:27079379-27079573
Coord A exon
chr2:27081704-27081794
Coord C2 exon
chr2:27082382-27082524
Length
91 bp
Sequences
Splice sites
3' ss Seq
GACGGGGTCTTGCTTCGTAGGAT
3' ss Score
7.56
5' ss Seq
TCCGTGAGT
5' ss Score
8.93
Exon sequences
Seq C1 exon
ACTGGGCTGAGAGCCCCTCCTGGGAACCCCCTCCCTTGAATGCTCTTTGAAGTGGGAGAGGGAGGCAGCTGGGGAAGCAGGACCAGAGACAGGCAGAGCCCGCACATCTCTGCACTCACCTTCCTGCACCGTGCACCTGGCAGTAGCTCTCACCCTTTTCTCTAAAAGGAGGACAACCTGCTGACCCTGGGTGAG
Seq A exon
GATGGATGGCAGACGGCAGCATCCACACTGGGCTTGGTCCTTGCTGGCTGTAGCAGTTGTGGCTGGGGGTGCGGCACCTACGGAGGCTTCC
Seq C2 exon
GACAACAGCCCCACATCCAACAGCCTAGAGGGAGGTGCTGACACCACTGCCTACTGGTGGGGGGAGTGGACCAAGTGGACAGCATGTTCCCGCAGTTGTGGGGGCGGGGTGACATCCCAGGAGCGCCACTGCCTTCAACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036040-'2-3,'2-2,4-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.333 C2=0.292
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0009014=TSP_1=PU(49.1=56.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACATCTCTGCACTCACCTT
R:
AACATGCTGTCCACTTGGTCC
Band lengths:
182-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types