HsaEX6063777 @ hg38
Exon Skipping
Gene
ENSG00000197859 | ADAMTSL2
Description
ADAMTS like 2 [Source:HGNC Symbol;Acc:HGNC:14631]
Coordinates
chr9:133532164-133537547:+
Coord C1 exon
chr9:133532164-133532570
Coord A exon
chr9:133536563-133536802
Coord C2 exon
chr9:133537405-133537547
Length
240 bp
Sequences
Splice sites
3' ss Seq
GGGTTCATCCTTCCCAACAGGGT
3' ss Score
8.86
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
Exon sequences
Seq C1 exon
CACTGGCGGAGAAAATCCCCTTCTTTTTTTTCTCTCTCTTTTTTTCTTTTTGAGACGGAATCTCACTCTTTCACCCAGACTGGAGGGCAGCGGCGAGATCTCGGCTCACTGCAACCTCCACCTCCCAGGTTCAAGCAATTCTCCTGCCTCAGCCTTCCGAGTAGCTGGGATTACAGGTGCCCGCCACCACGCCCAGCTAATTTTTGTATTTTTAGTAGAGACAGGATTTTACCATGTTGGCCATGCTGGTCTCAAACTCCTGACCTCGTGTGATCCCCCTGCTTCAGCCTCTCAAACTGCTGGGATTATAGGCATGAGCCACTGCGCCTGGCCAACAATCCCCTTCTAAAGGCAGGTGGTGTCTCCAGCACCAGGGCCATACGGCTGCAACACCCCTACAAGTGCCG
Seq A exon
GGTCTGCCAGACAACCACGACCAACTAGTCCCAGATAACCTTGAGGCCTGGGCACTGGCTGGGCCCCGAGGGCTCTTCCCAAAGCGTACCCTGGTCATCTGGAAGAGGATCGGAGCTGGCCTGGTGGTGACAGTGGCCTTGCTTCCTAGGATGGATGGCAGATGGCAATGTTCCTGCTGGGCCTGGTTCCTGCTGGTTCTGGCAGTTGTAGCTGGGGACACAGTGTCAACCGGGTCCACG
Seq C2 exon
GACAACAGCCCAACATCCAATAGCCTGGAGGGGGGCACCGACGCCACGGCCTTCTGGTGGGGGGAGTGGACCAAGTGGACGGCGTGTTCCCGCAGTTGCGGGGGTGGGGTGACATCCCAGGAGCGGCACTGCCTGCAGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197859-'0-5,'0-3,4-5=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.135 C2=0.260
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0009014=TSP_1=PU(49.1=56.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCAATTCTCCTGCCTCAGC
R:
GGCTATTGGATGTTGGGCTGT
Band lengths:
300-540
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains