HsaEX6064251 @ hg19
Exon Skipping
Gene
ENSG00000198569 | SLC34A3
Description
solute carrier family 34 (sodium phosphate), member 3 [Source:HGNC Symbol;Acc:20305]
Coordinates
chr9:140128561-140129183:+
Coord C1 exon
chr9:140128561-140128728
Coord A exon
chr9:140128868-140128984
Coord C2 exon
chr9:140129059-140129183
Length
117 bp
Sequences
Splice sites
3' ss Seq
TGACCCGGCATCCCCCACAGACT
3' ss Score
8.66
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
Exon sequences
Seq C1 exon
GCCGCCACCTGTTTGCGGGCACGGAGCTCACGGACCTGGCCGTGGGCTGCATCCTGCTGGCCGGCTCCCTGCTGGTGCTCTGCGGCTGCCTGGTCCTCATAGTCAAGCTGCTCAACTCTGTGCTGCGCGGCCGCGTGGCCCAGGTCGTGAGGACAGTCATCAATGCGG
Seq A exon
ACTTCCCCTTCCCGCTGGGCTGGCTCGGCGGCTACCTGGCCGTCCTCGCGGGCGCCGGCCTGACCTTCGCACTGCAGAGCAGCAGCGTCTTCACGGCGGCCGTCGTGCCCCTCATGG
Seq C2 exon
GGGTCGGGGTGATCAGTCTGGACCGGGCGTACCCCCTCTTACTGGGCTCCAACATCGGCACCACTACCACAGCCCTGCTGGCTGCCCTGGCCAGCCCCGCAGACAGGATGCTCAGCGCCCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198569-'10-11,'10-10,11-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0269010=Na_Pi_cotrans=PU(19.3=47.4)
A:
PF0269010=Na_Pi_cotrans=FE(27.9=100)
C2:
PF0269010=Na_Pi_cotrans=FE(29.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGGCTGCATCCTGCTG
R:
GCTGAGCATCCTGTCTGCG
Band lengths:
243-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)