RnoEX0082284 @ rn6
Exon Skipping
Gene
ENSRNOG00000010451 | Slc34a3
Description
solute carrier family 34 member 3 [Source:RGD Symbol;Acc:708551]
Coordinates
chr3:2450044-2450740:-
Coord C1 exon
chr3:2450573-2450740
Coord A exon
chr3:2450244-2450360
Coord C2 exon
chr3:2450044-2450168
Length
117 bp
Sequences
Splice sites
3' ss Seq
CCCACCATGCACACCTGCAGATT
3' ss Score
5.89
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
Exon sequences
Seq C1 exon
GCCATCACCTGTTTGCAGGCTCAGAGCTCACAGACCTGGCTGTGGGCTTCATCCTGCTGGCAGGTTCGCTGCTGGTGCTCTGTGTCTGTCTGGTCCTCATCGTTAAACTGCTCAACTCTGTGCTGCGGGGTCGCATTGCACAGGCTGTGAAGACCGTTATCAATGCAG
Seq A exon
ATTTTCCCTTCCCCTTTGGCTGGCTCAGCGGCTACTTGGCCATCCTCGTTGGAGCAGGCTTAACCTTCTTGCTTCAGAGCAGTAGTGTCTTCACGGCAGCCATTGTGCCTCTCATGG
Seq C2 exon
GGGTTGGGGTGATCAACCTGGAACGGGCCTACCCCCTCTTCCTGGGCTCCAACATTGGCACCACCACCACAGCCTTACTGGCTGCCCTGGCCAGCCCTGCAGACACGTTACTCTTCGCAGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010451_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0269010=Na_Pi_cotrans=PU(19.7=47.4)
A:
PF0269010=Na_Pi_cotrans=FE(28.5=100)
C2:
PF0269010=Na_Pi_cotrans=FE(29.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGGGCTTCATCCTGCTG
R:
GCGAAGAGTAACGTGTCTGCA
Band lengths:
247-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]