MmuEX6099436 @ mm10
Exon Skipping
Gene
ENSMUSG00000006469 | Slc34a3
Description
solute carrier family 34 (sodium phosphate), member 3 [Source:MGI Symbol;Acc:MGI:2159410]
Coordinates
chr2:25230573-25231143:-
Coord C1 exon
chr2:25230976-25231143
Coord A exon
chr2:25230773-25230889
Coord C2 exon
chr2:25230573-25230697
Length
117 bp
Sequences
Splice sites
3' ss Seq
CCCACCATGCACACCTGCAGATT
3' ss Score
5.89
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
Exon sequences
Seq C1 exon
GCCATCACCTGTTTGCCGGCTCAAAACTCACAGACTTGGCTGTGGGCTTCATCCTGCTGGCGGGCTCGCTGCTGGTGCTCTGTGTCTGTCTGGTCCTCATCGTTAAACTGCTCAACTCTGTGTTGAAGGGCCGCATCGCACAGGCTGTGAAGACTGTTATCAATGCAG
Seq A exon
ATTTTCCCTTCCCCTTTGGCTGGCTCAGCGGCTACTTGGCTATCCTCGTTGGCGCAGGCCTAACCTTCTTGCTTCAGAGCAGTAGTGTCTTCACAGCAGCCATCGTGCCTCTCATGG
Seq C2 exon
GGGTTGGGGTGATTGACCTGGAACGGGCCTACCCCCTCTTCTTGGGTTCCAACATCGGCACCACCACCACAGCCCTGCTGGCTGCCTTAGCCAGCCCTGCAGACATGTTAATCTTCGCAGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000006469-'22-27,'22-24,24-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0269010=Na_Pi_cotrans=PU(19.6=47.4)
A:
PF0269010=Na_Pi_cotrans=FE(28.3=100)
C2:
PF0269010=Na_Pi_cotrans=FE(29.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTCACAGACTTGGCTGTGG
R:
TTAACATGTCTGCAGGGCTGG
Band lengths:
255-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types