HsaEX6064474 @ hg19
Exon Skipping
Gene
ENSG00000151062 | CACNA2D4
Description
calcium channel, voltage-dependent, alpha 2/delta subunit 4 [Source:HGNC Symbol;Acc:20202]
Coordinates
chr12:2022189-2027870:-
Coord C1 exon
chr12:2027413-2027870
Coord A exon
chr12:2024020-2024101
Coord C2 exon
chr12:2022189-2022305
Length
82 bp
Sequences
Splice sites
3' ss Seq
GTCCTTTCATTGCCTGGCAGAGT
3' ss Score
7.86
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
Exon sequences
Seq C1 exon
AGAGGAGAGGCCAGCGGATTAAAGGGTTTCATGTTGCCACAGCCTCTCCCCCAGTCCCTGTCTCCGAGGCCTGCTTGCTAGGTGGGGCGACTCTTCTGTGAGCTGCAGCTGTGGGGCAGAGAGAAGCCCTCCCCACCCAGGACTGAGAGGCTGGAGACCCCAGGCTCGCCAAGGCACGGAAGACAAAGGCCTGGGGCGTCCTGGGGTCTGGGAGGAAGGCAGACAGAGCTCATGGTCTGTGGCTGCTCTGCCCTCCTTCCCCTCCCCAACCCCAGGCCCACCATGCCTGCAACTCCCAACTTCCTCGCAAACCCCAGCTCCAGCAGCCGCTGGATTCCCCTCCAGCCAATGCCCGTGGCCTGGGCCTTTGTGCAGAAGACCTCGGCCCTCCTGTGGCTGCTGCTTCTAGGCACCTCCCTGTCCCCTGCGTGGGGACAGGCCAAGATTCCTCTGGAAAC
Seq A exon
AGTGAAGCTATGGGCTGACACCTTCGGCGGGGACCTGTATAACACTGTGACCAAATACTCAGGCTCTCTCTTGCTGCAGAAG
Seq C2 exon
AAGTACAAGGATGTGGAGTCCAGTCTGAAGATCGAGGAGGTGGATGGCTTGGAGCTGGTGAGGAAGTTCTCAGAGGACATGGAGAACATGCTGCGGAGGAAAGTCGAGGCGGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000151062-'0-2,'0-1,2-2=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.053 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGGCCTTTGTGCAGAAGAC
R:
AGAACTTCCTCACCAGCTCCA
Band lengths:
169-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)