HsaEX6064474 @ hg38
Exon Skipping
Gene
ENSG00000151062 | CACNA2D4
Description
calcium voltage-gated channel auxiliary subunit alpha2delta 4 [Source:HGNC Symbol;Acc:HGNC:20202]
Coordinates
chr12:1913023-1918836:-
Coord C1 exon
chr12:1918247-1918836
Coord A exon
chr12:1914854-1914935
Coord C2 exon
chr12:1913023-1913139
Length
82 bp
Sequences
Splice sites
3' ss Seq
GTCCTTTCATTGCCTGGCAGAGT
3' ss Score
7.86
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
Exon sequences
Seq C1 exon
CCCCACCCCCTGCCACCCCCTCCCTGCTGTCAGGAGAGGATTAGAGGAGAGGCCAGCGGATTAAAGGGTTTCATGTTGCCACAGCCTCTCCCCCAGTCCCTGTCTCCGAGGCCTGCTTGCTAGGTGGGGCGACTCTTCTGTGAGCTGCAGCTGTGGGGCAGAGAGAAGCCCTCCCCACCCAGGACTGAGAGGCTGGAGACCCCAGGCTCGCCAAGGCACGGAAGACAAAGGCCTGGGGCGTCCTGGGGTCTGGGAGGAAGGCAGACAGAGCTCATGGTCTGTGGCTGCTCTGCCCTCCTTCCCCTCCCCAACCCCAGGCCCACCATGCCTGCAACTCCCAACTTCCTCGCAAACCCCAGCTCCAGCAGCCGCTGGATTCCCCTCCAGCCAATGCCCGTGGCCTGGGCCTTTGTGCAGAAGACCTCGGCCCTCCTGTGGCTGCTGCTTCTAGGCACCTCCCTGTCCCCTGCGTGGGGACAGGCCAAGATTCCTCTGGAAAC
Seq A exon
AGTGAAGCTATGGGCTGACACCTTCGGCGGGGACCTGTATAACACTGTGACCAAATACTCAGGCTCTCTCTTGCTGCAGAAG
Seq C2 exon
AAGTACAAGGATGTGGAGTCCAGTCTGAAGATCGAGGAGGTGGATGGCTTGGAGCTGGTGAGGAAGTTCTCAGAGGACATGGAGAACATGCTGCGGAGGAAAGTCGAGGCGGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000151062_CASSETTE5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.053 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGGCCTTTGTGCAGAAGAC
R:
AGAACTTCCTCACCAGCTCCA
Band lengths:
169-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains