MmuEX6006570 @ mm10
Exon Skipping
Gene
ENSMUSG00000041460 | Cacna2d4
Description
calcium channel, voltage-dependent, alpha 2/delta subunit 4 [Source:MGI Symbol;Acc:MGI:2442632]
Coordinates
chr6:119236526-119240781:+
Coord C1 exon
chr6:119236526-119236869
Coord A exon
chr6:119239022-119239103
Coord C2 exon
chr6:119240665-119240781
Length
82 bp
Sequences
Splice sites
3' ss Seq
TAGGCTTTCCTGTCCTGCAGAGT
3' ss Score
8.45
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
Exon sequences
Seq C1 exon
TGCCTTCCCCTTTGATCACCTGGGGTGGACCCTCTGCCCGCTGCAGCTGGGGGCAACATCTTTTACTTGGGACTGGACAGCAGGCAGAACACTTGCATGCCCAGGAGTTCCTGTGGCAGCAAGTTATCTCCCAGCAGGGGCTCTGTCCTCCTCCCCTGCCCCTCCCCCAGTGGGAACACCATGGCAAGATGCCCCATGCTGTCCTCTAGCCACAACCAAGACCACAGTGGACGGTGGACAGCAGTGTGGACCTCCCTGTGGAAGACGCCAATCATCCTGTGGCTGCTGCTCTCGGACACCTCCCTGCCTACCGTGAGGGGCCAGACCACAGTTCCTCTGGAAAC
Seq A exon
AGTGAAGCTGTGGGCCGATACCTTCGGCAGGAATCTGTACAACACGGTGACCAGATATTCAGGCTCCCTCCTGCTGCAGAAG
Seq C2 exon
AAGTACAAGGATGCAGAACCCAGTCTGAAGATCAAAGAGGTGGATGGCTTGGAGCTGGTGAAGAAGTTCTCGGAGGACATGGAGACCATGCTTCGGAGGAAAGTCGAGGCTGTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041460_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.145 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGACGCCAATCATCCTGTGG
R:
ATGGTCTCCATGTCCTCCGAG
Band lengths:
172-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types