RnoEX6014851 @ rn6
Exon Skipping
Gene
ENSRNOG00000008031 | Cacna2d4
Description
calcium voltage-gated channel auxiliary subunit alpha2delta 4 [Source:RGD Symbol;Acc:1562038]
Coordinates
chr4:151298548-151302590:+
Coord C1 exon
chr4:151298548-151298822
Coord A exon
chr4:151300700-151300781
Coord C2 exon
chr4:151302474-151302590
Length
82 bp
Sequences
Splice sites
3' ss Seq
TAGGCTTTCCTGTCTTGCAGAGT
3' ss Score
9
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
GGACTGGCCAGCAGGGAGAACGCTTGCATGCCCAGGGACCTGGGTGGCAGCAAGTTCGTTCACAGCAGGAGCACTGTCCTCCTCCCCTGTCCCTCCCCCAGTGGGAACACCATGGCAAGAAGCCCCACATTGTCCTCCAGCCACAGCTGGGGCCACCGTGGACAGCAGACAGCTGCATGGACCTTCCTGCGGAAAATGCCAATTGTCCTGTGGCTGCTGCTCTTGGACACCTCCCTGCCGACTGCAAGGAGCCAGGCTACAATTCCTCTGGAAAC
Seq A exon
AGTGAAGCTCTGGGCTGAAACCTTCGGCAGGGATCTGTACAGCACGGTGACCAGATACTCGGGTTCTCTCCTGCTGCAGAAG
Seq C2 exon
AAGTACAAGGATGCAGAACCCAGTCTGAAGATCAAAGAGGTGGATGGCTTGGAGCTGGTGAAGAAGTTCTCAGAGGACATGGAGACCATGCTTCGGAGGAAAGTTGAGGCTGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008031-'0-2,'0-0,2-2=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.193 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACATTGTCCTCCAGCCACAG
R:
TCAGACTGGGTTCTGCATCCT
Band lengths:
178-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]