HsaEX6065094 @ hg38
Exon Skipping
Gene
ENSG00000126838 | PZP
Description
PZP, alpha-2-macroglobulin like [Source:HGNC Symbol;Acc:HGNC:9750]
Coordinates
chr12:9194077-9196685:-
Coord C1 exon
chr12:9196571-9196685
Coord A exon
chr12:9196330-9196439
Coord C2 exon
chr12:9194077-9194238
Length
110 bp
Sequences
Splice sites
3' ss Seq
TGACTCTTTATATTTTTCAGACC
3' ss Score
9.53
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
CTTAACAGCAATGGCTGCATCACCCAACAAGTACACACCAAAATGCTCCAGATTACAAATACGGGCTTTGAAATGAAGCTTAGAGTGGAAGCCAGGATCAGAGAAGAGGGGACAG
Seq A exon
ACCTGGAAGTCACTGCAAACAGGATCAGTGAAATCACAAACATTGTATCCAAACTCAAATTCGTGAAAGTGGATTCACACTTTAGACAAGGAATCCCCTTTTTTGCACAG
Seq C2 exon
GTGCTTCTGGTGGATGGAAAAGGTGTGCCCATCCCCAATAAACTCTTCTTCATCTCTGTGAATGACGCCAATTATTACTCCAATGCAACCACCAATGAGCAGGGTCTTGCACAGTTTTCAATCAATACTACCAGTATCTCGGTTAATAAACTTTTTGTCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000126838-'8-9,'8-8,10-9=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGGCTGCATCACCCAACAA
R:
ACCGAGATACTGGTAGTATTGATTGA
Band lengths:
249-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains