HsaEX6075839 @ hg38
Exon Skipping
Gene
ENSG00000198794 | SCAMP5
Description
secretory carrier membrane protein 5 [Source:HGNC Symbol;Acc:HGNC:30386]
Coordinates
chr15:75017870-75019277:+
Coord C1 exon
chr15:75017870-75017971
Coord A exon
chr15:75018418-75018535
Coord C2 exon
chr15:75018789-75019277
Length
118 bp
Sequences
Splice sites
3' ss Seq
ACACTGGCCTCTTCCTGCAGCGG
3' ss Score
9.65
5' ss Seq
ATGGTACGT
5' ss Score
9.89
Exon sequences
Seq C1 exon
GACTGACAGCTCCTTCAGTTTCATGGCATTCTTCTTTACCTTCATGGCTCAGTTGGTCATCAGCATCATCCAGGCCGTGGGCATCCCAGGCTGGGGCGTCTG
Seq A exon
CGGCTGGATTGCTACCATCTCCTTCTTCGGAACGAACATTGGCTCGGCGGTGGTGATGCTAATTCCCACTGTCATGTTCACAGTGATGGCCGTCTTTTCCTTCATCGCCCTCAGCATG
Seq C2 exon
GTTCATAAATTTTACCGGGGAAGTGGGGGGAGTTTCAGCAAAGCTCAGGAGGAGTGGACCACAGGGGCCTGGAAGAATCCACATGTGCAGCAGGCAGCCCAGAACGCAGCCATGGGGGCAGCCCAGGGTGCCATGAATCAGCCTCAGACTCAGTATTCCGCCACCCCCAATTACACGTACTCCAATGAGATGTGAACCAGCCACGCCTACCAGGTGGCAGAGCTGGGGCCATTGGGACAGGGGGCTCAAGCCACATCGTCATTTGTGGTTACCAAGCAGGGTTCCCCCTTCCCTTTTCTCCTTCCCTACTTTGTACAAAGGACCAGAGTTATATATATATATATATGTATATGTCTGTACCCCAGCCCCCACCTTTCAGATTCTGCTCTTGGCACTCAGCTGTGGGCTGCACGTGGAGCTGTCCCGTGCGGTAGTAGCTGTGTCTGTGTCCCCTCGTGAAATAGTGTGCAGTGGAGGTCTCTTGTGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198794-'34-37,'34-36,36-37
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF041448=SCAMP=PD(15.9=90.0)
A:
PF041448=SCAMP=FE(22.0=100)
C2:
PF041448=SCAMP=PD(4.5=12.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCATCAGCATCATCCAGGCC
R:
CGTGGCTGGTTCACATCTCAT
Band lengths:
252-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains