GgaEX1051016 @ galGal3
Exon Skipping
Gene
ENSGALG00000014116 | SCAMP5
Description
NA
Coordinates
chr10:1764288-1764881:-
Coord C1 exon
chr10:1764780-1764881
Coord A exon
chr10:1764482-1764599
Coord C2 exon
chr10:1764288-1764404
Length
118 bp
Sequences
Splice sites
3' ss Seq
TGGTTTCTATCTCCCCGCAGCGG
3' ss Score
11.73
5' ss Seq
ATGGTACAG
5' ss Score
3.5
Exon sequences
Seq C1 exon
GACAGACAGCTCCTTCAGCTTCATGGCCTTCTTCTTCACCTTCATGGCCCAGCTGGTGATCAGCATCATCCAGGCCGTGGGGATTCCTGGCTGGGGTGTCTG
Seq A exon
CGGCTGGATTGCAGCAATCTCCTTCTTTGGGACCAATGTGGGGTCAGCTGTGGTGATGCTGATCCCCACCATCCTGTTCACAGGGATGGCAGTCTTCTCCTTCATCGCCCTCACTATG
Seq C2 exon
GTGCACAAGTTCTACCGGGGGAGTGGTGGGAGCTTCAGCAAAGCACAGGAGGAGTGGACCACGGGAGCCTGGAAGAACCCGCACATGCAGCAGGCAGCGCAGAACGCGGCCATGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014116-'4-6,'4-5,5-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF041448=SCAMP=FE(19.2=100)
A:
PF041448=SCAMP=FE(22.0=100)
C2:
PF041448=SCAMP=PD(4.5=20.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTCAGCTTCATGGCCTTCT
R:
GTTCTGCGCTGCCTGCTG
Band lengths:
196-314
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]