GgaEX1051016 @ galGal4
Exon Skipping
Gene
ENSGALG00000014116 | SCAMP5
Description
secretory carrier membrane protein 5 [Source:HGNC Symbol;Acc:HGNC:30386]
Coordinates
chr10:1879818-1882380:-
Coord C1 exon
chr10:1882279-1882380
Coord A exon
chr10:1881981-1882098
Coord C2 exon
chr10:1879818-1881903
Length
118 bp
Sequences
Splice sites
3' ss Seq
TGGTTTCTATCTCCCCGCAGCGG
3' ss Score
11.73
5' ss Seq
ATGGTACAG
5' ss Score
3.5
Exon sequences
Seq C1 exon
GACAGACAGCTCCTTCAGCTTCATGGCCTTCTTCTTCACCTTCATGGCCCAGCTGGTGATCAGCATCATCCAGGCCGTGGGGATTCCTGGCTGGGGTGTCTG
Seq A exon
CGGCTGGATTGCAGCAATCTCCTTCTTTGGGACCAATGTGGGGTCAGCTGTGGTGATGCTGATCCCCACCATCCTGTTCACAGGGATGGCAGTCTTCTCCTTCATCGCCCTCACTATG
Seq C2 exon
GTGCACAAGTTCTACCGGGGGAGTGGTGGGAGCTTCAGCAAAGCACAGGAGGAGTGGACCACGGGAGCCTGGAAGAACCCGCACATGCAGCAGGCAGCGCAGAACGCGGCCATGGGGGCTGCACAGGGGGCCATGATGCAGCACGAGACGCAGTACTCAGCCACCCCCAACTACACCTACTCCAATGAGATGTGAGCGGCGGGGCTGCGGCCTCGGGAAGAAGCACTGGGGGGGAAAGAGGAGGAGGAGGAGGAGGAAGGCTGAGCTGAGTTCCTGCAGCTGTTTCAGAAAGCTGGAGTGTACCATAATCTTCTTTCCCTGTTCTTTGTAACAGAATCTGTCTTTTCTTTTTTTTCCTTTTCCCCATCGTCACCTTGAGCTCTTCTTTTCTCCCCCTTTCATTTCTCACGTTGAAGAGGCTGTGAGTTGACCTGCAGGATCCCCATTGTGCGTGGTAGTACGTGTATGTTCCTGTATTCTTCTTTTCCCTGTGAAATAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014116_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF041448=SCAMP=FE(19.2=100)
A:
PF041448=SCAMP=FE(22.0=100)
C2:
PF041448=SCAMP=PD(4.5=12.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGATCAGCATCATCCAGGCC
R:
GCCGCTCACATCTCATTGGAG
Band lengths:
247-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]