HsaEX6091626 @ hg38
Exon Skipping
Gene
ENSG00000227500 | SCAMP4
Description
secretory carrier membrane protein 4 [Source:HGNC Symbol;Acc:HGNC:30385]
Coordinates
chr19:1918889-1926011:+
Coord C1 exon
chr19:1918889-1918990
Coord A exon
chr19:1923070-1923187
Coord C2 exon
chr19:1924108-1926011
Length
118 bp
Sequences
Splice sites
3' ss Seq
CACTCTCTTGTCCCTTGCAGCGG
3' ss Score
11.17
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
AGCCGACAGCTCCTTTAATTTCATGGCGTTTTTCTTCATCTTCGGAGCCCAGTTTGTCCTGACCGTCATCCAGGCGATTGGCTTCTCCGGCTGGGGCGCGTG
Seq A exon
CGGCTGGCTGTCGGCAATTGGATTCTTCCAGTACAGCCCGGGCGCTGCCGTGGTCATGCTGCTTCCAGCCATCATGTTCTCCGTGTCGGCTGCCATGATGGCCATCGCGATCATGAAG
Seq C2 exon
GTGCACAGGATCTACCGAGGGGCTGGCGGAAGCTTCCAGAAGGCACAGACGGAGTGGAACACGGGCACTTGGCGGAACCCACCGTCGAGGGAGGCCCAGTACAACAACTTCTCAGGCAACAGCCTGCCCGAGTACCCCACTGTGCCCAGCTACCCGGGCAGTGGCCAGTGGCCTTAGAGGGAGCCTGCCCTGCCCCCACCGCCCACCACCTCCTCCCCTTCATTCCTGCTGCTACCCCTGGTCCCGAGGGCTGGGAGTACCTGGGGCCCCATCCCCCCAGCTGGGATGGTGGAAGCCGGTGGTGGCCACGGACCGCCCCCCTCCTGCCAGGGCCACAGAACCCGTGTTCATCTCATCCGAGAGCGGAGTTCCTCACAAGCACTCCCCAGCAGCCCTTGGCCTCTGCCGTCCACAGGACGCCCTCTTGCTCCCGGAAACGTGTGGTCACCCGCCGTCCACTGCACGGCTGGTACGGCCTTGTCTTCAGGTCTCGAGGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000227500-'24-20,'24-19,30-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.089
Domain overlap (PFAM):
C1:
PF041448=SCAMP=PD(25.8=94.3)
A:
PF041448=SCAMP=PD(0.1=0.0),PF041448=SCAMP=FE(78.0=100)
C2:
PF041448=SCAMP=PD(16.0=13.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTCATCTTCGGAGCCCAGT
R:
GCTCCCTCTAAGGCCACTGG
Band lengths:
254-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains