MmuEX6049890 @ mm9
Exon Skipping
Gene
ENSMUSG00000078441 | Scamp4
Description
secretory carrier membrane protein 4 [Source:MGI Symbol;Acc:MGI:1928947]
Coordinates
chr10:80073773-80078528:+
Coord C1 exon
chr10:80073773-80073874
Coord A exon
chr10:80075087-80075204
Coord C2 exon
chr10:80077349-80078528
Length
118 bp
Sequences
Splice sites
3' ss Seq
TCCCCTCTCTCCCTCGGCAGTGG
3' ss Score
10.18
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
AGCCGACAGCTCCTTTAACTTCATGACATTCTTCTTCATCTTTGGAGCCCAGTTTGTGCTGACTGTCATTCAGGCCATTGGCTTCTCGGGCTGGGGCGCATG
Seq A exon
TGGTTGGCTGGCAGCTGTTGGCTTCTTTGGGACCAGTGTTGGGGCTGCTGTGGTTATGCTGGTCCCGGCCATCCTGTTTTCCTTGTCCGCCCTTGTGATGGCCGTCACTATCGTGAAG
Seq C2 exon
GTGCACAGGATCTACCGTGGGGCTGGTGGAAGCCTCCAGAAGGCACAGACAGAGTGGAGCGCTGGTACCTGGAGGAACCCACCATCGAGGGAGGCCCAGTTTAACAGTTTCTCTGGGAACAGCCTGCCTGAGTACCCCACTGTCCCCAGCTACTCGTCCAGCGGAGGCCACTGGCCTTAGGCGGCTGCCTGGCCCCAGCACCATGGCTCTGTCTCCTGTTACCACCCTCGGTCCTGAGGTCTGAGCATCTCTCAAGGGTCCCAGGAGGTCCTTGGCCCATGTTCATCTCTTGCCCAAGCCCTCAGCAAGCACTGCCCAACAACCATTGTCCACTGCCATCCTACCAGAGCCTGGCTGGATTTGCCCTGCTCCCACCTGTTAAGAGGGTAGAAACCCTCAGCCTGTGCAAGGAGAGGCCTCAACCTCCAAGCGCCTGTCCTTTGTGTTGCTGAGATGTATAAAGCCAAACTCTGAGCGCTTGTGTAGATGGGTGTGAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000078441-'11-16,'11-12,13-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.017
Domain overlap (PFAM):
C1:
PF041448=SCAMP=FE(19.2=100)
A:
PF041448=SCAMP=FE(22.0=100)
C2:
PF041448=SCAMP=PD(4.5=13.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTGGCTTCTCGGGCTGG
R:
AACAGGAGACAGAGCCATGGT
Band lengths:
247-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: