RnoEX0078305 @ rn6
Exon Skipping
Gene
ENSRNOG00000018271 | Scamp4
Description
secretory carrier membrane protein 4 [Source:RGD Symbol;Acc:68354]
Coordinates
chr7:11969720-11974057:-
Coord C1 exon
chr7:11973956-11974057
Coord A exon
chr7:11972668-11972785
Coord C2 exon
chr7:11969720-11970858
Length
118 bp
Sequences
Splice sites
3' ss Seq
GAGCCCTCTCTCATCTGCAGTGG
3' ss Score
6.94
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
AGCCGACAGCTCCTTTAACTTCATGGCATTCTTCTTCATCTTTGGAGCCCAGTTTGTGCTGACTGTCATTCAGGCCATCGGCTTCTCGGGCTGGGGCGCGTG
Seq A exon
TGGTTGGCTGGCCACCATTGGGTTCTTTGGGACCAGCGTTGGGGCTGCTGTGGTGATGCTGATCCCAGCCATCATGTTTTCCTTATCCGCTGTCGTGATGGCCATCACTATTGTGAAG
Seq C2 exon
GTACACAGGATCTACCGTGGGGCTGGCGGAAGCCTCCAGAAGGCACAAACAGAGTGGAGTGCTGGCACCTGGAGGAACCCGCCGTCCAGGGAGGCCCAGTTTAACAGTTTCTCTGGGAACAGCCTGCCTGAGTACCCCACTGTCCCCAGCTACTCAACCAGTGGAGGCCAGTGGCCTTAGGCGGCTGGCTGGCCCCAGCACTATGCTCTGTCTCCTGCTACCACCCTTGATCTTGAGGCCTGAGCATCTCCCCAGGGTCCCAGGAGGTCCTTGGCCCGTCCGTGTTCATCTCTTGTCAGACCCTAAGCAAGCACTGCCCAGCAGCCACTGTCCACTGCCATCCTGCGAGCCCGGCTGTGTTTGCCCTGCTCCAGCCTGCGCAAGGAGAGGCCTCAGCCCCCAAGCCCCTGGCCTTTGTTACGGAGATATGTGTAACTAAGCCCAGTGCACGTGTGTAGATGAGTGTGAGTGGACAGTCAGGAGTGTGGCGGTTGTACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018271_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.017
Domain overlap (PFAM):
C1:
PF041448=SCAMP=FE(19.2=100)
A:
PF041448=SCAMP=FE(22.0=100)
C2:
PF041448=SCAMP=PD(4.5=13.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGACAGCTCCTTTAACTTCA
R:
GACAGTGGGGTACTCAGGCAG
Band lengths:
245-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]