BtaEX6040397 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000045762 | SCAMP4
Description
Bos taurus secretory carrier membrane protein 4 (SCAMP4), mRNA. [Source:RefSeq mRNA;Acc:NM_001024566]
Coordinates
chr7:45849296-45856001:+
Coord C1 exon
chr7:45849296-45849397
Coord A exon
chr7:45852752-45852869
Coord C2 exon
chr7:45854470-45856001
Length
118 bp
Sequences
Splice sites
3' ss Seq
CATGTTCTCTTCTCTTGCAGTGG
3' ss Score
11.26
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
ATCCGACAGCTCCTTCAACTTCATGGCGTTTTTCTTCATCTTCGGAGCCCAGTTCATCTTGACCATCATCCAGGCCGTCGGGTTCTCAGGATGGGGCGCGTG
Seq A exon
TGGTTGGCTGGCAGCCATTGGCTTCTTCCAGACCAGCGTTGGGGCCGCTGTGGTCATGCTGCTCCCAGCTATCATGTTCTCCATGTCGGCTGCCATGATGGCTGTCATGATCATGAAG
Seq C2 exon
GTGCACAGCATCTACCGAGGGACTGGTGGGAGCTTCCAGAAGGCGCAGACGGAGTGGAGCACGGGCACCTGGAGGAACCCGCCATCCAGGGAGGCCCAGTTCAACAACTTCTCGGGGAACAGCCTGCCCGAGTACCCCACCGTGCCCAGTTACCCGGCCAGTGGTGGCCAGTGGCCTTAGGGGGAGCCAGCAGCCCTGCTGCCCACCTGCCGCCAGCCCACCTACCCCTCACCGTCCACTCCCACCACCTTGGGTTTGGTGAGGCCCCCCCGCAGCTCAGAGGGCAGCTCAGGGGCTCTCGGCGACCCGAACCCACATTCATCTCATTCTTGAGGCAGGTCTCCTCGGCAGCTCTGCCCGGAAGCTGTCTGGTCACTGCCATCTGGCAGGATACCCCCCCATAGTCTGGAGCACCGTTTGCCATGGCGACGTCCACTGTGCTGCAGCCACACCCTCTCCCTCCGGGTCGCAGGGGGCTGACCAGGCCACCCCTCTCAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000045762-'10-8,'10-6,11-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.085
Domain overlap (PFAM):
C1:
PF041448=SCAMP=FE(19.2=100)
A:
PF041448=SCAMP=FE(22.0=100)
C2:
PF041448=SCAMP=PD(4.5=13.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAGCCCAGTTCATCTTGAC
R:
CTCCCCCTAAGGCCACTGG
Band lengths:
246-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]