GgaEX1051011 @ galGal4
Exon Skipping
Gene
ENSGALG00000001030 | SCAMP4
Description
secretory carrier membrane protein 4 [Source:HGNC Symbol;Acc:HGNC:30385]
Coordinates
chr28:2123737-2125032:-
Coord C1 exon
chr28:2124931-2125032
Coord A exon
chr28:2124619-2124736
Coord C2 exon
chr28:2123737-2124487
Length
118 bp
Sequences
Splice sites
3' ss Seq
CCCCTTTCCCTCCCTTGCAGTGG
3' ss Score
11.54
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
Exon sequences
Seq C1 exon
GTCGGACAGCTCCTTTAATTTCATGACCTTCTTCTTCGTCTTCGGCATGCAGTTCGTCCTCACCTTCCTGCAGGCAGTGGGTTTCTCCGGATGGGGAGCGTG
Seq A exon
TGGGTGGTTGGCGGCCATCACGTTCTTCAGCACCAACGTGGCAGCTGCTGTGTTCATGCTGTTCCCTGCCATTATGTTCACGATGGCAGCGCTGGCGATGCTTGTCTGCATTTTGAGG
Seq C2 exon
GTGCACAAAATCTACCGAGGGGCCGGCGGGAGCTTCCAGAAGGCTCAGGATGAATGGCACAGCGGTGCATGGAGGAACCCCCCCAGCAGAGAGGCCCAATACAACAACTTTGCAGGGAACAGCCTGCCCGAATACCCCACGGTGCCCAACTACCCCTCGGGAAACCAATGGCCTTAGGCAGCCCCGGGCTGCACGCTGCCTGGATTCTCTCCTTTTTTTGCTCCTTTTATCATTATCTGAAAAGGTCATTTGCATTCCCCTCCGTACGCTCCGCTCTTCGTGGGGTTTTCTGGTTGGTTTTTTTTTTGTCCCCTCGTGGCTGCAGAAGATGTGTGCTGCCTGCTATGGCACGCCAAGAGCTCCGCACGGCCGGATCGGAACATCTGAAGGTTTTTCCCTTGTGCTGCTCCAGCCTTTGCCTCGTTGCAGGCCGAGGAACCCACTGCTCGCTGCCCTTTGCTCGAGGGCTCCTTGTGATTGTGGCTGAGCTCCCTGCAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001030-'10-13,'10-12,11-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.017
Domain overlap (PFAM):
C1:
PF041448=SCAMP=FE(19.2=100)
A:
PF041448=SCAMP=FE(22.0=100)
C2:
PF041448=SCAMP=PD(4.5=13.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTCTTCGTCTTCGGCATGC
R:
ATTGGTTTCCCGAGGGGTAGT
Band lengths:
242-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]