DreEX6099087 @ danRer10
Exon Skipping
Gene
ENSDARG00000010531 | scamp4
Description
secretory carrier membrane protein 4 [Source:ZFIN;Acc:ZDB-GENE-050913-40]
Coordinates
chr22:22284334-22287397:+
Coord C1 exon
chr22:22284334-22284435
Coord A exon
chr22:22286251-22286368
Coord C2 exon
chr22:22287017-22287397
Length
118 bp
Sequences
Splice sites
3' ss Seq
AAACTGTTTTGTCTTTGCAGTGG
3' ss Score
8.3
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GGCTGATAGTTCCTTCAACTTCATGGCGTTCTTCTTCATTTTCTTCCTGCAATGTGTGCTTGCCTTTATCCAGAGTTTGGGAATATCCGGTTGGGGCGTTTG
Seq A exon
TGGTTGGATTGCCACAGTGATATTCTTTGGCACAGATGTAGTCGCGGCTATATTTATGCTCATCTGCACTCTGCTCTTCACTGTAAACGCACTTCTCATGGCATTCGTTCTCATCAAG
Seq C2 exon
GTTCATCGACTGTATCGTGGCGGAGGGGGCAGTTTTCAGCGGGCACAGGAAGAATGGACCACCGGTGCATGGAAAAATCCAACTGTAAGAGAAGCTGGATTCAATGCCATCTCTGAAACTGGCCCCAGCCTGCCCCAGTACCCAGCCGCTGTGCCCAATTACCCAGAAAGCGGGCCCTGGTGATACCACTTCTGATCTACAGATGGAGCCAAAGCAACACTGGTTGTCCTAATATTAAAGGCGCAGTTTGCAGAGCGACGTTGCCCAACATTTGTGTGCCAAGAAAACACTTTGGCCAGATCACAGACTTGTGTATATATTTTTTTTAATATAGCAAAAAGATCTAATGCTAATTATTTCTCATAAACTTGATGCATTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000010531-'6-9,'6-7,8-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF041448=SCAMP=FE(19.2=100)
A:
PF041448=SCAMP=FE(22.0=100)
C2:
PF041448=SCAMP=PD(4.5=13.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATATCCGGTTGGGGCGTTT
R:
CCAGTGTTGCTTTGGCTCCAT
Band lengths:
245-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]